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Report for Sequence Feature Glyma13g27490

Feature Type:gene_model
Chromosome:Gm13
Start:30673040
stop:30675578
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g27490
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G04640AT Annotation by Michelle Graham. TAIR10: ATPase, F1 complex, gamma subunit protein | chr4:2350761-2351882 REVERSE LENGTH=373 SoyBaseE_val: 0ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0000096GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006546GO-bp Annotation by Michelle Graham. GO Biological Process: glycine catabolic process SoyBaseN/AISS
GO:0006636GO-bp Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process SoyBaseN/AISS
GO:0006733GO-bp Annotation by Michelle Graham. GO Biological Process: oxidoreduction coenzyme metabolic process SoyBaseN/AISS
GO:0006754GO-bp Annotation by Michelle Graham. GO Biological Process: ATP biosynthetic process SoyBaseN/AISS
GO:0006766GO-bp Annotation by Michelle Graham. GO Biological Process: vitamin metabolic process SoyBaseN/AISS
GO:0008652GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process SoyBaseN/AISS
GO:0009072GO-bp Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process SoyBaseN/AISS
GO:0009106GO-bp Annotation by Michelle Graham. GO Biological Process: lipoate metabolic process SoyBaseN/AISS
GO:0009108GO-bp Annotation by Michelle Graham. GO Biological Process: coenzyme biosynthetic process SoyBaseN/AISS
GO:0009117GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process SoyBaseN/AISS
GO:0009657GO-bp Annotation by Michelle Graham. GO Biological Process: plastid organization SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009772GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem II SoyBaseN/AISS
GO:0009773GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0015986GO-bp Annotation by Michelle Graham. GO Biological Process: ATP synthesis coupled proton transport SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0019748GO-bp Annotation by Michelle Graham. GO Biological Process: secondary metabolic process SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0043085GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity SoyBaseN/AISS
GO:0044272GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur compound biosynthetic process SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009544GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast ATP synthase complex SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0045261GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting ATP synthase complex, catalytic core F(1) SoyBaseN/AISS
GO:0030234GO-mf Annotation by Michelle Graham. GO Molecular Function: enzyme regulator activity SoyBaseN/AISS
GO:0046933GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism SoyBaseN/AISS
GO:0046961GO-mf Annotation by Michelle Graham. GO Molecular Function: proton-transporting ATPase activity, rotational mechanism SoyBaseN/AISS
KOG1531 KOG F0F1-type ATP synthase, gamma subunit JGI ISS
PTHR11693Panther ATP SYNTHASE GAMMA CHAIN JGI ISS
PTHR11693:SF9Panther ATP SYNTHASE GAMMA-RELATED JGI ISS
PF00231PFAM ATP synthase JGI ISS
UniRef100_I1M100UniRef Annotation by Michelle Graham. Best UniRef hit: ATP synthase gamma chain n=1 Tax=Glycine max RepID=I1M100_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1M100UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP synthase gamma chain n=1 Tax=Glycine max RepID=I1M100_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g27490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g27490 not represented in the dataset
Glyma13g27490 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g27490
ParalogEvidenceComments
Glyma15g11490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g27490 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g204800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g27490
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma13g27490
>Glyma13g27490.2   sequence type=transcript   gene model=Glyma13g27490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATTAACACAAGGAGAGGATAAGACCCCTCTCTCTCTCTCACACACACAAACACACAAAAAACAAAGCAAAAAAAAATCTCAAAATAAAACAACCAAACCACACACCTCACACCCTCTTCAACATCCTCAGCAAGAACAAGAAGAAGAAGAAGAAACAATGTCTTGCTCCAATCTGACAATGTTGGTGTCCTCAAAACCTTCCCTTTCCGACCCCTCGAACCTCTCCTTCCGCTCTGTCCTGAACCCTTTTCAGCTCCCTACACAAAACCCAGCTTCATGCACCCCTTCACGCTCCTCAAGCACCCAAATTCAGTGTGGTCTGAGAGAACTGAGAACCCGCATTGAGTCTGTGAAGAACACGCAGAAAATCACGGAGGCAATGAAGCTTGTTGCTGCAGCCAAAGTGAGAAGAGCTCAAGAAGCTGTTGTGAACGGAAGACCCTTCTCAGAGACCCTGGTTGAAGTCCTCTACAACATCAACGAGCAGCTCCAAACTGAGGACGTAGACATCCCTCTCACAAAGGTTAGACCTGTCAAGAAAGTTGCACTTGTTGTGATCACCGGCGACCGCGGCCTCTGCGGCGGTTTCAACAACGCAATCATAAAGAAAGCCGAGGCTAGAATCAGGGAATTGAAGGAGCTTGGCTTGCAATTTACTGTCATAAGTGTTGGCAAGAAGGGTAACTCTTATTTCATCCGAAGGCCTTATATTCCTGTTGACAAGTTCCTTGAAGGTGGCACTCTTCCAACTGCTAAGGAGGCTCAGGCCATTGCTGATGATGTTTTCTCACTGTTTGTCAGTGAAGAGGTTGACAAGGTGGAGCTTCTCTACACCAAGTTCGTGTCGCTTGTCAAATCGGATCCCGTGATTCACACCTTGCTCCCGCTTTCGCCAAAGGGAGAGATTTGTGATATCAATGGTGTGTGTGTTGATGCTGCTGAGGATGAGTTCTTCAGGTTGACTACCAAGGAAGGAAAGTTGACTGTGGAGAGGGATGTTGTGAGGACTAAAACCATCGATTTTTCGCCAATTTTGCAGTTCGAACAAGACCCGGTTCAGATCCTTGATGCACTGTTGCCACTGTATTTGAACAGCCAGGTCCTGAGGGCATTGCAGGAGTCCTTGGCGAGTGAACTTGCCGCGAGAATGAGTGCCATGAGCAATGCCACGGATAATGCTATTGAATTGAAGAAGAACTTGTCCATTGTGTACAATAGGGAGCGCCAAGCTAAAATCACTGGTGAAATTCTGGAAATTGTGGCTGGGGCCAATGCCTTGCAATAGTGCAGTTTGTAGGTATTGTTTACTTATTATAATGATGATGGGTGGTGGTTGCCCTTTTCATTTACTAATGTGTTTGTCTCTAAGATACTTGTTCAATTTTTACGCTTCTGTTGAAACTTGAATGAAATGCGCAGGCTTTGTGCAATAGGGAAAACTGTGATTTATATCTGAAGCGGACATTTTTTTTGTTTATGTATTTTTTTTTTTTTTTTGCCTTCTGAATGATGTATGTAACGAATCAATAATAGATCTATAATATAAAGATTCAGAGAGTTCTCTCTGTTGATTTGATGCACC
Coding sequences of Glyma13g27490
>Glyma13g27490.1   sequence type=CDS   gene model=Glyma13g27490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTGCTCCAATCTGACAATGTTGGTGTCCTCAAAACCTTCCCTTTCCGACCCCTCGAACCTCTCCTTCCGCTCTGTCCTGAACCCTTTTCAGCTCCCTACACAAAACCCAGCTTCATGCACCCCTTCACGCTCCTCAAGCACCCAAATTCAGTGTGGTCTGAGAGAACTGAGAACCCGCATTGAGTCTGTGAAGAACACGCAGAAAATCACGGAGGCAATGAAGCTTGTTGCTGCAGCCAAAGTGAGAAGAGCTCAAGAAGCTGTTGTGAACGGAAGACCCTTCTCAGAGACCCTGGTTGAAGTCCTCTACAACATCAACGAGCAGCTCCAAACTGAGGACGTAGACATCCCTCTCACAAAGGTTAGACCTGTCAAGAAAGTTGCACTTGTTGTGATCACCGGCGACCGCGGCCTCTGCGGCGGTTTCAACAACGCAATCATAAAGAAAGCCGAGGCTAGAATCAGGGAATTGAAGGAGCTTGGCTTGCAATTTACTGTCATAAGTGTTGGCAAGAAGGGTAACTCTTATTTCATCCGAAGGCCTTATATTCCTGTTGACAAGTTCCTTGAAGGTGGCACTCTTCCAACTGCTAAGGAGGCTCAGGCCATTGCTGATGATGTTTTCTCACTGTTTGTCAGTGAAGAGGTTGACAAGGTGGAGCTTCTCTACACCAAGTTCGTGTCGCTTGTCAAATCGGATCCCGTGATTCACACCTTGCTCCCGCTTTCGCCAAAGGGAGAGATTTGTGATATCAATGGTGTGTGTGTTGATGCTGCTGAGGATGAGTTCTTCAGGTTGACTACCAAGGAAGGAAAGTTGACTGTGGAGAGGGATGTTGTGAGGACTAAAACCATCGATTTTTCGCCAATTTTGCAGTTCGAACAAGACCCGGTTCAGATCCTTGATGCACTGTTGCCACTGTATTTGAACAGCCAGGTCCTGAGGGCATTGCAGGAGTCCTTGGCGAGTGAACTTGCCGCGAGAATGAGTGCCATGAGCAATGCCACGGATAATGCTATTGAATTGAAGAAGAACTTGTCCATTGTGTACAATAGGGAGCGCCAAGCTAAAATCACTGGTGAAATTCTGGAAATTGTGGCTGGGGCCAATGCCTTGCAATAG

>Glyma13g27490.2   sequence type=CDS   gene model=Glyma13g27490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTGCTCCAATCTGACAATGTTGGTGTCCTCAAAACCTTCCCTTTCCGACCCCTCGAACCTCTCCTTCCGCTCTGTCCTGAACCCTTTTCAGCTCCCTACACAAAACCCAGCTTCATGCACCCCTTCACGCTCCTCAAGCACCCAAATTCAGTGTGGTCTGAGAGAACTGAGAACCCGCATTGAGTCTGTGAAGAACACGCAGAAAATCACGGAGGCAATGAAGCTTGTTGCTGCAGCCAAAGTGAGAAGAGCTCAAGAAGCTGTTGTGAACGGAAGACCCTTCTCAGAGACCCTGGTTGAAGTCCTCTACAACATCAACGAGCAGCTCCAAACTGAGGACGTAGACATCCCTCTCACAAAGGTTAGACCTGTCAAGAAAGTTGCACTTGTTGTGATCACCGGCGACCGCGGCCTCTGCGGCGGTTTCAACAACGCAATCATAAAGAAAGCCGAGGCTAGAATCAGGGAATTGAAGGAGCTTGGCTTGCAATTTACTGTCATAAGTGTTGGCAAGAAGGGTAACTCTTATTTCATCCGAAGGCCTTATATTCCTGTTGACAAGTTCCTTGAAGGTGGCACTCTTCCAACTGCTAAGGAGGCTCAGGCCATTGCTGATGATGTTTTCTCACTGTTTGTCAGTGAAGAGGTTGACAAGGTGGAGCTTCTCTACACCAAGTTCGTGTCGCTTGTCAAATCGGATCCCGTGATTCACACCTTGCTCCCGCTTTCGCCAAAGGGAGAGATTTGTGATATCAATGGTGTGTGTGTTGATGCTGCTGAGGATGAGTTCTTCAGGTTGACTACCAAGGAAGGAAAGTTGACTGTGGAGAGGGATGTTGTGAGGACTAAAACCATCGATTTTTCGCCAATTTTGCAGTTCGAACAAGACCCGGTTCAGATCCTTGATGCACTGTTGCCACTGTATTTGAACAGCCAGGTCCTGAGGGCATTGCAGGAGTCCTTGGCGAGTGAACTTGCCGCGAGAATGAGTGCCATGAGCAATGCCACGGATAATGCTATTGAATTGAAGAAGAACTTGTCCATTGTGTACAATAGGGAGCGCCAAGCTAAAATCACTGGTGAAATTCTGGAAATTGTGGCTGGGGCCAATGCCTTGCAATAG
Predicted protein sequences of Glyma13g27490
>Glyma13g27490.1   sequence type=predicted peptide   gene model=Glyma13g27490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSCSNLTMLVSSKPSLSDPSNLSFRSVLNPFQLPTQNPASCTPSRSSSTQIQCGLRELRTRIESVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTEDVDIPLTKVRPVKKVALVVITGDRGLCGGFNNAIIKKAEARIRELKELGLQFTVISVGKKGNSYFIRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDVVRTKTIDFSPILQFEQDPVQILDALLPLYLNSQVLRALQESLASELAARMSAMSNATDNAIELKKNLSIVYNRERQAKITGEILEIVAGANALQ*

>Glyma13g27490.2   sequence type=predicted peptide   gene model=Glyma13g27490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSCSNLTMLVSSKPSLSDPSNLSFRSVLNPFQLPTQNPASCTPSRSSSTQIQCGLRELRTRIESVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTEDVDIPLTKVRPVKKVALVVITGDRGLCGGFNNAIIKKAEARIRELKELGLQFTVISVGKKGNSYFIRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDVVRTKTIDFSPILQFEQDPVQILDALLPLYLNSQVLRALQESLASELAARMSAMSNATDNAIELKKNLSIVYNRERQAKITGEILEIVAGANALQ*






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