Report for Sequence Feature Glyma13g27480
Feature Type: gene_model
Chromosome: Gm13
Start: 30660060
stop: 30670615
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g27480
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G11720 AT
Annotation by Michelle Graham. TAIR10: starch synthase 3 | chr1:3951597-3956840 FORWARD LENGTH=1094
SoyBase E_val: 0 ISS
GO:0009058 GO-bp
Annotation by Michelle Graham. GO Biological Process: biosynthetic process
SoyBase N/A ISS
GO:0009250 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucan biosynthetic process
SoyBase N/A ISS
GO:0019252 GO-bp
Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009011 GO-mf
Annotation by Michelle Graham. GO Molecular Function: starch synthase activity
SoyBase N/A ISS
GO:0016757 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups
SoyBase N/A ISS
GO:2001070 GO-mf
Annotation by Michelle Graham. GO Molecular Function: starch binding
SoyBase N/A ISS
PTHR12526 Panther
GLYCOSYLTRANSFERASE
JGI ISS
PTHR12526:SF17 Panther
STARCH SYNTHASE
JGI ISS
PF00534 PFAM
Glycosyl transferases group 1
JGI ISS
PF03423 PFAM
Carbohydrate binding domain (family 25)
JGI ISS
PF08323 PFAM
Starch synthase catalytic domain
JGI ISS
UniRef100_A4F2M4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Starch synthase III n=1 Tax=Phaseolus vulgaris RepID=A4F2M4_PHAVU
SoyBase E_val: 0 ISS
UniRef100_UPI000233C317 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233C317 related cluster n=1 Tax=unknown RepID=UPI000233C317
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g27480
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g27480
Paralog Evidence Comments
Glyma15g11500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g27480 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g204700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g27480
Coding sequences of Glyma13g27480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g27480.1 sequence type=CDS gene model=Glyma13g27480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGATGTCTATGCAACTAAACTGCAAAACGGTGTTTCCCTACAGAGGCGGTTACATATGTTCACCGTGCAAAGCAGGTTGGGGTGTTTCGTTCGTCCGTGCCAGTGCAGATTTTTCTCGGAAGAGGCAACAGAAGAAGGTGTCAGTTGCAAGGACTAAGGGCACTTCTGGAAAGGGTTTTGTCCCAAGCAAAAAGAATACAAGAATGAAGAAGGGAGACACGTTAACTTCAGTAGTCAGTGAGGTTTCAGGGGGTGATAAAAAGCAAACAGTTGAAGTCAATGTAGATGATACTGATAAAGAAGGGGAACTTGAATTCTCCCAAGAGGAGAAATTTGAGGCTGTAGATAGAATTGATGAAAATGTTGGGGATGTGGGGGATTTATCATTGTTAGATGAGACAGTGGGGGAGTTATCGTTGTTAGATGAGAGCAATCAGGCTACCATTTCTGTATTTGATGAGGATGTCGAGGTTCTTGAGTCATGGAAGGAGGAGTTTCCTTACAATGGAGGTGTTGGGATTGTTGAAGATTCTTCGGAAGAAGGGTTGTTAGAGAGTGCAGAAATTGATGAAAATGTTAAAGATACAGATACTGATGGTGATATTACTGAGGAAGCTGTTGAGGAATCAAGCAGTGCTGATGATGATAGAATAAACGAGGAAGCTGCTGGGCTGTTGAAGTTAGAGTTGGAAGCAAATCAGCGCAGGCAGGAGATAGAGAGGATTGCAGAGGAAAAACTTTCTCAAGGGATTAAGCTGTTTGTATATCCTCCTGTGGTTAAACCTGATCAAGATATAGAACTTTTTCTCAACAAGAACCTTTCAACACTAAGTGAAGAGCCAGACATTCTGATCATGGGGGCATTCAATGATTGGAAGTGGAAATCTTTTTCCATTAGGTTGAATAAGTTGCATCTCAAGGGCGATTGGTGGTCTTGCCAATTATATGTGCCAAAAGAAGCCTACAAGGTAGACTTTGTGTTCTTCAATGGACAAAATGTCTATGACAATAATGACCAAAAAGACTTCTGCATACCCGTTGATGGAGGAATGGATGCATTAGCATTCGAAGATTTCTTGCTTGAGGAGAAACGTAAAGAATTAGAAGAACTTGCTAGGGCGCAAGCTGAAAGGGAAAGACAAGCTGAAGAGCAAAGGCGAATAGAGGCAGACAGAGCTGCAAAGGAAGAGGACAGGGCACGGGCGAAGGCAGAGATTGGGAAAATGCGAGAAACATTGCCGCAATTGTTGAAAAATGCTGTAAAGTCCGTTGATAACGTTTGGCATATTGAACCTAGCGAATTTAAAGGCAAGGACTTGATCAGATTATATTACAACAGAAGCTCAGGTCCTCTTGCAAATGCTAATGAAATATGGATTCATGGGGGGCACAATAATTGGAAGTATGGATTATCAATCGTCGAAAGGCTTGTCAAGTCTGTTTTAAAAGGAGGTGAATGGTGGTATGCCGATGTTGTTGTACCTGACCAAGCTCTTGTCCTGGATTGGGTCTTTGCTGATGGTCCACCTAAGAAGGCAGTTGTCTATGATAACAATCGTAAACAAGATTTCCATGCCATTGTCCCTGGGGCTATACCTGATGAACAGTATTGGGTTGAGGAAGAGCAGCTGATATACAGAAAATTTCAGGAGGAGAGGAGGTTAAGAGAGGATGCGATACGTGCAAAGGCTGAAAAAACAGCACAAATGAAAGCTGAAACAAAGGAAAGAACTTTGAAAGGATTTTTGCTTTCTCAAAAGCATATTGTATTCACTGACCCTCTCGATGTTCAAGCAGGGAGTACAGTGACAATATTTTATAACCCGTCCAACACAAATCTGAATGGAAAACCTGAGGTTTGGTTTAGATGTTCATTTAATCGTTGGTCTCACCGTAATGGTCCATTGCCACCTCAGAGAATGTTACCTGCAGAGAATGGCACTCATGTCAAAGCCTCTTTCAAGGTTCCACTGGATGCATACATGATGGACTTTGTATTCTCTGAGAGTGAACATGGTGGAGTTTTTGATAACAAATTTGGAATGGATTATCACATACCAGTTTTTGGAAGTATTGCAAAGGAACCACCTTTGCATATCATCCATATTGCTGTGGAGATGGCCCCAATTGCAAAAGTTGGAGGCCTTGGTGACGTTGTTACTAGTCTATCCCGGGCTGTTCAGGATTTAAATCACAATGTGGACATCATTCTTCCAAAGTATGACTGCTTGAACCTTAGCAATGTAAAGGACTTTGACTATCACAAAAGCTATTCCTGGGGAGGCACTGAAATAAAAGTATGGCATGGAAAAGTTGAAGGCCTCTCTGTCTACTTTTTGGAGCCTCAAAATGGATTCTTTCAGGTTGGCTGTGTATATGGTCGTGGGAATGATGGAGAGAGATTTGGTTTTTTTTGTCATGCTGCTCTTGAGTTTCTACTCCAAAATGGATTTCATCCTGATATCATCCACTGCCATGATTGGTCAAGTGCTCCGGTTGCATGGCTATTTAAAGACAACTATGCACATTATGGTCTTAGTAAAGCACGAGTTGTCTTCACAATTCATAACCTTGAATTTGGAGCCCATTCCATTGGAAAAGCTATGGCATATGCTGACAAAGCTACAACTGTCTCTCCCACATATTCAAGAGAGATTGCTGGTAATCCTGTAATTGCTCCTCATCTTCACAAGTTCCATGGTATAATAAATGGAATCGACCCAGATATATGGGACCCATATAATGATAAATTCATTCCCGTATCATACTCTTCAGAAAATGTTGTTGAAGGAAAAAGAGCTTCGAAGGAAACCTTGCAACAAAGGCTTAGTTTAAAAAAAGCTGATCTTCCTTTAGTGGGAATTATTACTCGATTGACTCATCAGAAAGGAATCCATCTCATCAAACATGCCATATGGCGCACCCTAGAACGTGGTGGACAGGTTGTACTACTTGGTTCAGCTCCAGATCCTCGTATCCAAAATGATTTTGTGAATTTGGCCAATGAATTGCATTCCGCTCATCATGATCGTGCTAGACTTTGCCTTGCATATGATGAGCCTCTTTCACACTTGATATATGCTGGTGCTGATTTCATTCTAGTTCCTTCAATCTTTGAGCCATGTGGACTCACTCAACTCACAGCAATGAGATATGGTTCAATACCTGTTGTTCGGAAAACTGGAGGACTTTACGATACAGTATTCGACGTTGACCATGATAAGGATAGAGCCCAAGCGCAAGGTCTTGAGCCAAATGGATTTAGTTTTGATGGAGCTGATACTGGAGGTGTTGATTATGCTCTCAATAGGGCAATATCAGCATGGTATGAAGGCCGTGATTGGTTTAACAGTTTATGCAAAAGGGTGATGGAGCAAGACTGGTCTTGGAACCGGCCTGCTCTTGACTATTTGGAGCTTTACCATGCAGCACGCAAGGCAGAATGA
Predicted protein sequences of Glyma13g27480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g27480.1 sequence type=predicted peptide gene model=Glyma13g27480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEMSMQLNCKTVFPYRGGYICSPCKAGWGVSFVRASADFSRKRQQKKVSVARTKGTSGKGFVPSKKNTRMKKGDTLTSVVSEVSGGDKKQTVEVNVDDTDKEGELEFSQEEKFEAVDRIDENVGDVGDLSLLDETVGELSLLDESNQATISVFDEDVEVLESWKEEFPYNGGVGIVEDSSEEGLLESAEIDENVKDTDTDGDITEEAVEESSSADDDRINEEAAGLLKLELEANQRRQEIERIAEEKLSQGIKLFVYPPVVKPDQDIELFLNKNLSTLSEEPDILIMGAFNDWKWKSFSIRLNKLHLKGDWWSCQLYVPKEAYKVDFVFFNGQNVYDNNDQKDFCIPVDGGMDALAFEDFLLEEKRKELEELARAQAERERQAEEQRRIEADRAAKEEDRARAKAEIGKMRETLPQLLKNAVKSVDNVWHIEPSEFKGKDLIRLYYNRSSGPLANANEIWIHGGHNNWKYGLSIVERLVKSVLKGGEWWYADVVVPDQALVLDWVFADGPPKKAVVYDNNRKQDFHAIVPGAIPDEQYWVEEEQLIYRKFQEERRLREDAIRAKAEKTAQMKAETKERTLKGFLLSQKHIVFTDPLDVQAGSTVTIFYNPSNTNLNGKPEVWFRCSFNRWSHRNGPLPPQRMLPAENGTHVKASFKVPLDAYMMDFVFSESEHGGVFDNKFGMDYHIPVFGSIAKEPPLHIIHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSNVKDFDYHKSYSWGGTEIKVWHGKVEGLSVYFLEPQNGFFQVGCVYGRGNDGERFGFFCHAALEFLLQNGFHPDIIHCHDWSSAPVAWLFKDNYAHYGLSKARVVFTIHNLEFGAHSIGKAMAYADKATTVSPTYSREIAGNPVIAPHLHKFHGIINGIDPDIWDPYNDKFIPVSYSSENVVEGKRASKETLQQRLSLKKADLPLVGIITRLTHQKGIHLIKHAIWRTLERGGQVVLLGSAPDPRIQNDFVNLANELHSAHHDRARLCLAYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKDRAQAQGLEPNGFSFDGADTGGVDYALNRAISAWYEGRDWFNSLCKRVMEQDWSWNRPALDYLELYHAARKAE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
