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Report for Sequence Feature Glyma13g27455

Feature Type:gene_model
Chromosome:Gm13
Start:30640306
stop:30644693
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g27455
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42280AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:17611428-17613163 REVERSE LENGTH=359 SoyBaseE_val: 3.00E-49ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0046685GO-bp Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR10985Panther BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED JGI ISS
PTHR10985:SF42Panther SUBFAMILY NOT NAMED JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_G7IWI2UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein n=1 Tax=Medicago truncatula RepID=G7IWI2_MEDTR SoyBaseE_val: 5.00E-137ISS
UniRef100_UPI000233BD9CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BD9C related cluster n=1 Tax=unknown RepID=UPI000233BD9C SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g27455
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g27455 not represented in the dataset
Glyma13g27455 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g27455
ParalogEvidenceComments
Glyma12g36750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g27455 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g204400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g27455
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g27455
>Glyma13g27455.1   sequence type=CDS   gene model=Glyma13g27455   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTATTGTGTATAGTCATGCTGTGAAGTACTCTCGAGGGGAGACAAGGATGAACCCAGAAATGGATTCAAATATTGGTCAACATTGTCATCAACAAAATTCTGGACTAATGAGATACCGTTCTGCCCCAAGCTCATTGCTCACAAGCCTTGTGAACAACAACAACAACAACAATGGTTATGTCAATGGTGAATCTTTCAGAAGTGAGCATAATCATCATCATCATCAGCAGCAGCAGCAGCAGCATTATCCTCCCTCTACAAGCTCTGAAATGGAAAACATGTTGGCCAAGTTGATTTCTTCCAACAATTCTGAGCCTTTGCAAATGAAGGAAGAAGCAGGGGACTCTGTTTCACAACCACCACAACAACACAATGGTTACTCTTATGGGTCTTCACCTCAGATGATGTACCAAACTCAGCAAATTCAAGGCTTGCCTATACCAAATGGTTCTTTAGGGGCTTCAGGGAGTGCTTTTGATGGCTCATTCAGTGCAGTAAATTCCCTTGCTTCACAGAATTCCACACAACCTAAAATGGGTGCTTCCACCAATTGCAACAATCTCATTAGACAAAAGAGTTCTCCTGCTGGTTTTTTCTCCAATTACTCAGTTGATAATGCATTGAGAGATGTGGCAAGTTTTAGGGGCTGTGATGTCTCAAATGGACAAGCTATTACATCCTCTAGTGGATTGCATGGTACTTTGAACTTCTCATCTAGGCCATCCTCTTGCTCCACCCGGATGCCACAGATTGCTGAAAATGGAAATGAAGATGTGGAAGCAAATTGTGTTGAAAGTAGAAACCTGAGAAATGACAATATCAACAACACTAAATGTTACATGCCTAGTTTCACCACTGACTTCTGGGATGGTTCTGCATTCAGTGCCTCCAGAACAGCTAGTAACAGTGGTGAAATCTCATTTTCCACTTCAAAGGCTATGGATATTCAGGATGAAGATTTTGGATACCAAAAAGTTGGTTTGACCCACCATTTGAGTCTGCCTGGCTCTTCCAGTAGGATGGCTACAATGGAGAAGCTTTATCAAATTCAAGGATCTGTTCCATGTAAAATTCGTGCCAAGAGAGGTTTTGCCACTCACCCGAGAAGTATTGCTGAAAGGGAAAGGAGAACACGAATTAGCGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACTGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACTTGCAGAAACAAGTTAAGATTCTCAGAGATACTAGGGCAAAATGCACTTGTACAAGCAATCAGAAGCACTGA
Predicted protein sequences of Glyma13g27455
>Glyma13g27455.1   sequence type=predicted peptide   gene model=Glyma13g27455   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIVYSHAVKYSRGETRMNPEMDSNIGQHCHQQNSGLMRYRSAPSSLLTSLVNNNNNNNGYVNGESFRSEHNHHHHQQQQQQHYPPSTSSEMENMLAKLISSNNSEPLQMKEEAGDSVSQPPQQHNGYSYGSSPQMMYQTQQIQGLPIPNGSLGASGSAFDGSFSAVNSLASQNSTQPKMGASTNCNNLIRQKSSPAGFFSNYSVDNALRDVASFRGCDVSNGQAITSSSGLHGTLNFSSRPSSCSTRMPQIAENGNEDVEANCVESRNLRNDNINNTKCYMPSFTTDFWDGSAFSASRTASNSGEISFSTSKAMDIQDEDFGYQKVGLTHHLSLPGSSSRMATMEKLYQIQGSVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVEYIKDLQKQVKILRDTRAKCTCTSNQKH*






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