Glyma13g27390 - SoyBase

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Report for Sequence Feature Glyma13g27390

Feature Type:	gene_model
Chromosome:	Gm13
Start:	30581420
stop:	30584330
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g27390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45400	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr2:18703960-18706235 REVERSE LENGTH=364	SoyBase	E_val: 4.00E-105	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010422	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016131	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid metabolic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016614	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1502	KOG	Flavonol reductase/cinnamoyl-CoA reductase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF9	Panther	NAD(P)H STEROID DEHYDROGENASE-RELATED	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_Q9SDZ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2'-hydroxy isoflavone/dihydroflavonol reductase homolog (Fragment) n=1 Tax=Glycine max RepID=Q9SDZ2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BD99	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BD99 related cluster n=1 Tax=unknown RepID=UPI000233BD99	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g27390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g27390 not represented in the dataset	Glyma13g27390 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g27390

Paralog	Evidence	Comments
Glyma12g36690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g27390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g203900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g27390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g27390

Limit To All Plant Sequences

>Glyma13g27390.2   sequence type=transcript   gene model=Glyma13g27390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAAAAAAAAAAAGTCCAGGGGTTTCATTTTCCAATTAGCATATATGTCACTTTTCAATTTTCTTTCTTGTTCATCTAACTAGTGCATATATAGCAGTCATCAGAGCAAGAGAGAATTCACCAAAGGCAAATGGAAGAAAGCAAAGGAAGAGTGTGTGTTACAGGAGGTACAGGTTTTATTGGTTCATGGATAATCAAGAGGCTCCTTGAAGATGGTTACTCTGTTAACACCACTGTGAGACCCGATCCAGGGTGTATGGGAGTTTTCCATGTTGCTACACCAGTCGACTTTGAATTAAGAGAACCAGAAGAAGTAGTGACCAAAAGATCCATTGAAGGTGCACTTGGCATTTTGAAGGCATGCCTCAATTCCAAGACAGTGAAGCGAGTTGTTTACACCTCTAGTGCCTCTGCTGTCGATAACAATAAAGAAGAAATTATGGATGAAAGCTCATGGAACGACGTGGATTATCTTAGATCTTCAAAGCCATTTGGTTGGTCATATTCTGTTTCAAAGACATTGACAGAAAAGGCAGTGCTTGAATTTGGAGAACAAAATGGATTGGATGTTGTCACACTAATTCCAACTCTTGTTTTTGGACCCTTCATTTGTCCAAAGCTTCCAAGCTCAGTTCGTAATTCATTGGATTTTATACTTGGAGAAAAGGGTACATTTGGTGTCGTTCTACAGACAGATATGGTGCATGTGGATGACGTGGCTAGGGCACATATATTTCTGCTTGAACATCCTAATCCAAAAGGGAGGTATATTTGTTCACAATGTTCAGTAACTTATGAAAGGATCTCCAAACTTGTTTCTGCCAAATATCCAGAATTTCAACCACCACCTGTAGAGTCTCTGAATCATATTGAAGGTACAAAAGGATCATATTTGTCATCAAAGAAGCTGATAGATGCAGGATTTGTGTACAAGTATGGACTTGAGGAAATGGTTGATGATGCCATCCAATGCTGCAAAGAAAAGGGTTACCTGTGAAGTAGCTAGCGGTGTACCCTTTTTTATGTTATTATAGGATGAGGATGGCTATATATCCATACAATAAGACAATAATTAACTACTTTGATAAATGGTTGTTCATGCTACCAATTGAATGCTTTTGCCTTTTGGAATTGGATTGCAGTTGGCAATGGAAACTAACTATTTCAGTTGGTATTTAAACCTTTAAATAACACGTGCTGTGTTAGTTGTGACAATATATACCAAAGGTCCAATTCAGTTGGTATTTAAACCTTTTTATGTATTCAATTCTTACAGCTAAAAAAAAGTTGTGACTATGTACATATCTTTTACAAAAGTAGTAATAGGGAGCTCTTTTCATAAATAAAAAAGAAGTAACAGAGTTGTGAGACTTTAAAT

Coding sequences of Glyma13g27390

Limit To All Plant Sequences

>Glyma13g27390.1   sequence type=CDS   gene model=Glyma13g27390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAAGCAAAGGAAGAGTGTGTGTTACAGGAGGTACAGGTTTTATTGGTTCATGGATAATCAAGAGGCTCCTTGAAGATGGTTACTCTGTTAACACCACTGTGAGACCCGATCCAGAACACAGGAAAGATGTTAGCTTTCTTACTAGCTTACCTAGAGCATCCCAAAGGCTACAAATTCTCAGTGCTGATCTCAGCAATCCAGAAAGTTTTATTGCTTCCATTGAAGGGTGTATGGGAGTTTTCCATGTTGCTACACCAGTCGACTTTGAATTAAGAGAACCAGAAGAAGTAGTGACCAAAAGATCCATTGAAGGTGCACTTGGCATTTTGAAGGCATGCCTCAATTCCAAGACAGTGAAGCGAGTTGTTTACACCTCTAGTGCCTCTGCTGTCGATAACAATAAAGAAGAAATTATGGATGAAAGCTCATGGAACGACGTGGATTATCTTAGATCTTCAAAGCCATTTGGTTGGTCATATTCTGTTTCAAAGACATTGACAGAAAAGGCAGTGCTTGAATTTGGAGAACAAAATGGATTGGATGTTGTCACACTAATTCCAACTCTTGTTTTTGGACCCTTCATTTGTCCAAAGCTTCCAAGCTCAGTTCGTAATTCATTGGATTTTATACTTGGAGAAAAGGGTACATTTGGTGTCGTTCTACAGACAGATATGGTGCATGTGGATGACGTGGCTAGGGCACATATATTTCTGCTTGAACATCCTAATCCAAAAGGGAGGTATATTTGTTCACAATGTTCAGTAACTTATGAAAGGATCTCCAAACTTGTTTCTGCCAAATATCCAGAATTTCAACCACCACCTGTAGAGTCTCTGAATCATATTGAAGGTACAAAAGGATCATATTTGTCATCAAAGAAGCTGATAGATGCAGGATTTGTGTACAAGTATGGACTTGAGGAAATGGTTGATGATGCCATCCAATGCTGCAAAGAAAAGGGTTACCTGTGA

>Glyma13g27390.2   sequence type=CDS   gene model=Glyma13g27390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAAGCAAAGGAAGAGTGTGTGTTACAGGAGGTACAGGTTTTATTGGTTCATGGATAATCAAGAGGCTCCTTGAAGATGGTTACTCTGTTAACACCACTGTGAGACCCGATCCAGGGTGTATGGGAGTTTTCCATGTTGCTACACCAGTCGACTTTGAATTAAGAGAACCAGAAGAAGTAGTGACCAAAAGATCCATTGAAGGTGCACTTGGCATTTTGAAGGCATGCCTCAATTCCAAGACAGTGAAGCGAGTTGTTTACACCTCTAGTGCCTCTGCTGTCGATAACAATAAAGAAGAAATTATGGATGAAAGCTCATGGAACGACGTGGATTATCTTAGATCTTCAAAGCCATTTGGTTGGTCATATTCTGTTTCAAAGACATTGACAGAAAAGGCAGTGCTTGAATTTGGAGAACAAAATGGATTGGATGTTGTCACACTAATTCCAACTCTTGTTTTTGGACCCTTCATTTGTCCAAAGCTTCCAAGCTCAGTTCGTAATTCATTGGATTTTATACTTGGAGAAAAGGGTACATTTGGTGTCGTTCTACAGACAGATATGGTGCATGTGGATGACGTGGCTAGGGCACATATATTTCTGCTTGAACATCCTAATCCAAAAGGGAGGTATATTTGTTCACAATGTTCAGTAACTTATGAAAGGATCTCCAAACTTGTTTCTGCCAAATATCCAGAATTTCAACCACCACCTGTAGAGTCTCTGAATCATATTGAAGGTACAAAAGGATCATATTTGTCATCAAAGAAGCTGATAGATGCAGGATTTGTGTACAAGTATGGACTTGAGGAAATGGTTGATGATGCCATCCAATGCTGCAAAGAAAAGGGTTACCTGTGA

Predicted protein sequences of Glyma13g27390

Limit To All Plant Sequences

>Glyma13g27390.1   sequence type=predicted peptide   gene model=Glyma13g27390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESKGRVCVTGGTGFIGSWIIKRLLEDGYSVNTTVRPDPEHRKDVSFLTSLPRASQRLQILSADLSNPESFIASIEGCMGVFHVATPVDFELREPEEVVTKRSIEGALGILKACLNSKTVKRVVYTSSASAVDNNKEEIMDESSWNDVDYLRSSKPFGWSYSVSKTLTEKAVLEFGEQNGLDVVTLIPTLVFGPFICPKLPSSVRNSLDFILGEKGTFGVVLQTDMVHVDDVARAHIFLLEHPNPKGRYICSQCSVTYERISKLVSAKYPEFQPPPVESLNHIEGTKGSYLSSKKLIDAGFVYKYGLEEMVDDAIQCCKEKGYL*

>Glyma13g27390.2   sequence type=predicted peptide   gene model=Glyma13g27390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESKGRVCVTGGTGFIGSWIIKRLLEDGYSVNTTVRPDPGCMGVFHVATPVDFELREPEEVVTKRSIEGALGILKACLNSKTVKRVVYTSSASAVDNNKEEIMDESSWNDVDYLRSSKPFGWSYSVSKTLTEKAVLEFGEQNGLDVVTLIPTLVFGPFICPKLPSSVRNSLDFILGEKGTFGVVLQTDMVHVDDVARAHIFLLEHPNPKGRYICSQCSVTYERISKLVSAKYPEFQPPPVESLNHIEGTKGSYLSSKKLIDAGFVYKYGLEEMVDDAIQCCKEKGYL*

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