SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G63530 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:23456407-23457787 REVERSE LENGTH=248 | SoyBase | E_val: 4.00E-96 | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0046621 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of organ growth | SoyBase | N/A | ISS |
| GO:0048437 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ development | SoyBase | N/A | ISS |
| GO:0051865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autoubiquitination | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0031624 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin conjugating enzyme binding | SoyBase | N/A | ISS |
| PTHR14155 | Panther | RING FINGER PROTEIN 6/12/38 | JGI | ISS | |
| PTHR14155:SF11 | Panther | OS03G0173900 PROTEIN | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_G7LDM4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase Arkadia n=1 Tax=Medicago truncatula RepID=G7LDM4_MEDTR | SoyBase | E_val: 7.00E-141 | ISS |
| UniRef100_I1M0Y6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M0Y6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g27330 not represented in the dataset |
Glyma13g27330 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g36650 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g203300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g27330.3 sequence type=transcript gene model=Glyma13g27330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAATTAAAAGTTATCATTATTCAAATTCTCCCAAATCCATGGGCACAAAAGAGAGAGAGAAGCACACTGCACACCACATTGCCACATAACACAACATCGAAACCCTCTCTCCCTCTCCCTCTCTTCCTCTCCCTCTCTTCCAACCATTCCGAATGTGAACAAGTTGTTGTTGTTGAACGGTATTATATATAGTGTGTAGTGTGGTGGTTTTTTTTTTCTCTTCTTGAAGGTGCAAAAATGAATGATGGTAGACAAATGGGGGTGCATTACGTAGACGCTGGGTTCCCTTATGCTGTTAATGATAACTTCGTGGATTTTTTCCAAGGATTCACTCATGTGCCCGTCAATTATGCCTTTGCTGGCTCAATTCCTGATCAGGAAAGTGTCTACTGGTCAATGAACATGAATCCCTATAAGTTTGGATTGTCTGGTCCTGGGAGTACATCTTACTATAGTTCTTATGAGGTAAATGGTCATTTGCCGAGAATGGAGATAGATAGGGCTGAGTGGGAATACCCTTCGACAATTACCACTGTGGAAGAACCAGCTACAACAGATTCTCCACCTAGAAGAGATGGAGTCACGAGCATGCAGACCATCCCTGAAGAATGCAGTCCAAATCATCATGAGTCCAACAGTAGTAGCCAGGTCATATGGCAAGACAACATCTATCCTGATGATATGACTTATGAGGAACTACTGGACCTGGGGGAGGCAGTTGGGACTCAAAGCCGAGGTCTTTCCCAAGAACTTATTGATATGCTTCCAACCTCAAAGTACAAATTTGGTAGTTTATTCAAGAGAAAAAATTCTGGGAAAAGGTGTGTAATTTGTCAGATGACATACAGAAGAGGTGACCAGCAAATGAAATTGCCATGCAGCCATGTCTATCATGGTGAATGCATCACCAAGTGGCTTAGCATTAACAAGAAATGTCCTGTTTGCAACACTGAGGTTTTTGGCGAGGAATCAACGCATTAGCATCAAGGTGGCAAAAGAGGATCCTTTTTGCTCTATTAATTTTTGCTTCTCATCCAACTCACCCTCTCCCTCCCATTCTCTTTTTTAAGTTTTAATTTTTTACACGTAGGTAGGTGTAGTATGAAGAACTATGGCAGCTCTCACACAATATATGTTTTGTTTACTAGAAACAACCTATTGGAGTCGCATCTTCTTGTGGTTAATGTGTGATTTTGTGTGTATTCATGCAATATATATTCTCTTAGCTTTTGTGCCCCTTCCTTTGGTATTTGGGATTGAAAAATCTGCTTCTCAGCCATTGACCAACATAGAAGTGTTGAGATTTTGGAGTAACAATCTCATGAGCATGCTAAATGGATTGAAAAAGGAAATGTGTGGAATGCTCGGGGATATGGAGATCTTAATTTGAGAAAAGTGCATGTTTCGATATCCAGTGAAAAATTACTTGAAGCACATCAGGAATCTTATTCTTGTTTTCATTTTGTTTTTATTCAATAGATGTACATTGGTACACGTGTCACAACTTAACAATTTCAACTGCAAATTGAATATACACATTCGGCTAAG
>Glyma13g27330.2 sequence type=CDS gene model=Glyma13g27330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGATGGTAGACAAATGGGGGTGCATTACGTAGACGCTGGGTTCCCTTATGCTGTTAATGATAACTTCGTGGATTTTTTCCAAGGATTCACTCATGTGCCCGTCAATTATGCCTTTGCTGGCTCAATTCCTGATCAGGAAAGTGTCTACTGGTCAATGAACATGAATCCCTATAAGTTTGGATTGTCTGGTCCTGGGAGTACATCTTACTATAGTTCTTATGAGGTAAATGGTCATTTGCCGAGAATGGAGATAGATAGGGCTGAGTGGGAATACCCTTCGACAATTACCACTGTGGAAGAACCAGCTACAACAGATTCTCCACCTAGAAGAGATGGAGTCACGAGCATGCAGACCATCCCTGAAGAATGCAGTCCAAATCATCATGAGTCCAACAGTAGTAGCCAGGTCATATGGCAAGACAACATCTATCCTGATGATATGACTTATGAGGAACTACTGGACCTGGGGGAGGCAGTTGGGACTCAAAGCCGAGGTCTTTCCCAAGAACTTATTGATATGCTTCCAACCTCAAAGTACAAATTTGGTAGTTTATTCAAGAGAAAAAATTCTGGGAAAAGGTGTGTAATTTGTCAGATGACATACAGAAGAGGTGACCAGCAAATGAAATTGCCATGCAGCCATGTCTATCATGGTGAATGCATCACCAAGTGGCTTAGCATTAACAAGAAATGTCCTGTTTGCAACACTGAGGTTTTTGGCGAGGAATCAACGCATTAG >Glyma13g27330.3 sequence type=CDS gene model=Glyma13g27330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGATGGTAGACAAATGGGGGTGCATTACGTAGACGCTGGGTTCCCTTATGCTGTTAATGATAACTTCGTGGATTTTTTCCAAGGATTCACTCATGTGCCCGTCAATTATGCCTTTGCTGGCTCAATTCCTGATCAGGAAAGTGTCTACTGGTCAATGAACATGAATCCCTATAAGTTTGGATTGTCTGGTCCTGGGAGTACATCTTACTATAGTTCTTATGAGGTAAATGGTCATTTGCCGAGAATGGAGATAGATAGGGCTGAGTGGGAATACCCTTCGACAATTACCACTGTGGAAGAACCAGCTACAACAGATTCTCCACCTAGAAGAGATGGAGTCACGAGCATGCAGACCATCCCTGAAGAATGCAGTCCAAATCATCATGAGTCCAACAGTAGTAGCCAGGTCATATGGCAAGACAACATCTATCCTGATGATATGACTTATGAGGAACTACTGGACCTGGGGGAGGCAGTTGGGACTCAAAGCCGAGGTCTTTCCCAAGAACTTATTGATATGCTTCCAACCTCAAAGTACAAATTTGGTAGTTTATTCAAGAGAAAAAATTCTGGGAAAAGGTGTGTAATTTGTCAGATGACATACAGAAGAGGTGACCAGCAAATGAAATTGCCATGCAGCCATGTCTATCATGGTGAATGCATCACCAAGTGGCTTAGCATTAACAAGAAATGTCCTGTTTGCAACACTGAGGTTTTTGGCGAGGAATCAACGCATTAG
>Glyma13g27330.2 sequence type=predicted peptide gene model=Glyma13g27330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNDGRQMGVHYVDAGFPYAVNDNFVDFFQGFTHVPVNYAFAGSIPDQESVYWSMNMNPYKFGLSGPGSTSYYSSYEVNGHLPRMEIDRAEWEYPSTITTVEEPATTDSPPRRDGVTSMQTIPEECSPNHHESNSSSQVIWQDNIYPDDMTYEELLDLGEAVGTQSRGLSQELIDMLPTSKYKFGSLFKRKNSGKRCVICQMTYRRGDQQMKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEESTH* >Glyma13g27330.3 sequence type=predicted peptide gene model=Glyma13g27330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNDGRQMGVHYVDAGFPYAVNDNFVDFFQGFTHVPVNYAFAGSIPDQESVYWSMNMNPYKFGLSGPGSTSYYSSYEVNGHLPRMEIDRAEWEYPSTITTVEEPATTDSPPRRDGVTSMQTIPEECSPNHHESNSSSQVIWQDNIYPDDMTYEELLDLGEAVGTQSRGLSQELIDMLPTSKYKFGSLFKRKNSGKRCVICQMTYRRGDQQMKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEESTH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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