Glyma13g27230 - SoyBase

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Report for Sequence Feature Glyma13g27230

Feature Type:	gene_model
Chromosome:	Gm13
Start:	30392981
stop:	30399469
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g27230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20910	AT	Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit A9 \| chr3:7326495-7328369 FORWARD LENGTH=303	SoyBase	E_val: 1.00E-42	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0010262	GO-bp	Annotation by Michelle Graham. GO Biological Process: somatic embryogenesis	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048316	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed development	SoyBase	N/A	ISS
GO:0055046	GO-bp	Annotation by Michelle Graham. GO Biological Process: microgametogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016602	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CCAAT-binding factor complex	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG1561	KOG	CCAAT-binding factor, subunit B (HAP2)	JGI		ISS
PTHR12632	Panther	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	JGI		ISS
PTHR12632:SF5	Panther	TRANSCRIPTIONAL ACTIVATOR PHP2-RELATED	JGI		ISS
PF02045	PFAM	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	JGI		ISS
UniRef100_I1M0X4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0X4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I3TAV7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transcription factor Y subunit A7 n=1 Tax=Medicago truncatula RepID=I3TAV7_MEDTR	SoyBase	E_val: 5.00E-132	ISS

Expression Patterns of Glyma13g27230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g27230

Paralog	Evidence	Comments
Glyma12g36540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g27230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g202300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g27230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g27230

Limit To All Plant Sequences

>Glyma13g27230.4   sequence type=transcript   gene model=Glyma13g27230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAAAGAAAACATTTTTTTCATTAATATTCGTAAAAGTTAATTCTTATTCTCATCACTGCATCATGCTCCATTGTCTCTCTTGAGGTTGCAGACTTAGAGAGAGAGAGAGATAATGGGTCTCATTTCAATGCAATTCAGGTTCTGAAAACCAAAGCTTTTCATAGGAAAAGTTGTGCTAAGATGCCGGGGAAAGCTGACACTGATGATTGGCGAGTAGAGCGGGGTGAGCAGATTCAGTTTCAGTCTTCCATTTACTCTCATCATCAGCCTTGGCGGTGTGGAGTGGGGGAAAATGCCTCTAAATCATCTTCAGCTGATCAGTTAAATGGTTCAATCGTGAATGGTATCACGCGGTCTGAGACCAATGATAAGTCAGGTGAAGGTGTTGCCAAAGAATACCAAAACATCAAACATGCCGTGTTGTCAACCCCATTTACCATGGACAAACATCTTGCTCCAAATCCCCAGATGGAACTTGTTGGTCATTCAGTTGTTTTAACATCTCCTTATTCAGATGCACAGCATGGTCAAATCTTGACTACTTACGGGCAACAAGTTATGATAAACCCTCAATTGTACGGAATGTATCATGCTAGAATGCCTTTGCCACCTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCTGAGCTTGAAAAGAAAGTAATCAAAAACAGGAAGCCATACCTCCATGAATCCCGTCACCTTCATGCCATGAGAAGGGCTAGAGGCAATGGTGGTCGCTTTCTCAACAAAAAGAAGCTCGAAAATTACAATTCTGATGCCACTTCAGACATTGGGCAAAATACTGGTGCAAACCCCTCAACAAACTCACCTAACACTCAACATTTGTTCACCAACAATGAGAATCTAGGCTCATCAAATGCGTCACAAGCCACGGTTCAGGACATGCACAGAGTGGAGAGTTTCAATATTGGTTACCATAATGGAAATGGTCTTGCAGAACTGTACCATTCACAAGCAAATGGAAAAAAGGAGGGAAACTGCTTTGGTAAAGAGAGGGACCCTAATAATGGGGCTTTCAAATGACACTTCGCCCAGCCATACAGCAACAGTTAGGTGAAGATGAAGGGTTTTTATCTCATCCAACTTGTGATGCTGTATTGAAGGCAATTCATTCTTGGCTTAGTTAAGTGGTGAGACCAGTGACATGGAGTACACTCTGCCTTGTTTGGTCTCTCCCCTTGCATTTGTTTCTCTTTACAAGTCCATATGTAAAAATGGATAACGGAAAGAAAAAGAAAAATCACTTTTGTTTGAGAACTTTTTTAAGTTTGTTTTTAACTGTGTGAAGGTTTCATAAAATTGTGGACTGACTTGTGTGACATATGCTCCACAAAACCTTAAAACTTTCGTCTATTTTGTCCTATATCTCCTTGCACATTATTAATCTAAATTGGTGCATATTTTCTATAGTAATATTTGTATTCTTGATGCTTGTGTATGTGTTTCCATATGAAATTATACGCGAGGCATGTGAATGAAAATAAAATTTTAGTGGAGAAGCTTGGCTTGCTTAATAAAAT

Coding sequences of Glyma13g27230

Limit To All Plant Sequences

>Glyma13g27230.3   sequence type=CDS   gene model=Glyma13g27230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGGGAAAGCTGACACTGATGATTGGCGAGTAGAGCGGGGTGAGCAGATTCAGTTTCAGTCTTCCATTTACTCTCATCATCAGCCTTGGCGGTGTGGAGTGGGGGAAAATGCCTCTAAATCATCTTCAGCTGATCAGTTAAATGGTTCAATCGTGAATGGTATCACGCGGTCTGAGACCAATGATAAGTCAGGTGAAGGTGTTGCCAAAGAATACCAAAACATCAAACATGCCGTGTTGTCAACCCCATTTACCATGGACAAACATCTTGCTCCAAATCCCCAGATGGAACTTGTTGGTCATTCAGTTGTTTTAACATCTCCTTATTCAGATGCACAGCATGGTCAAATCTTGACTACTTACGGGCAACAAGTTATGATAAACCCTCAATTGTACGGAATGTATCATGCTAGAATGCCTTTGCCACCTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCTGAGCTTGAAAAGAAAGTAATCAAAAACAGGAAGCCATACCTCCATGAATCCCGTCACCTTCATGCCATGAGAAGGGCTAGAGGCAATGGTGGTCGCTTTCTCAACAAAAAGAAGCTCGAAAATTACAATTCTGATGCCACTTCAGACATTGGGCAAAATACTGGTGCAAACCCCTCAACAAACTCACCTAACACTCAACATTTGTTCACCAACAATGAGAATCTAGGCTCATCAAATGCGTCACAAGCCACGGTTCAGGACATGCACAGAGTGGAGAGTTTCAATATTGGTTACCATAATGGAAATGGTCTTGCAGAACTGTACCATTCACAAGCAAATGGAAAAAAGGAGGGAAACTGCTTTGGTAAAGAGAGGGACCCTAATAATGGGGCTTTCAAATGA

>Glyma13g27230.4   sequence type=CDS   gene model=Glyma13g27230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGGGAAAGCTGACACTGATGATTGGCGAGTAGAGCGGGGTGAGCAGATTCAGTTTCAGTCTTCCATTTACTCTCATCATCAGCCTTGGCGGTGTGGAGTGGGGGAAAATGCCTCTAAATCATCTTCAGCTGATCAGTTAAATGGTTCAATCGTGAATGGTATCACGCGGTCTGAGACCAATGATAAGTCAGGTGAAGGTGTTGCCAAAGAATACCAAAACATCAAACATGCCGTGTTGTCAACCCCATTTACCATGGACAAACATCTTGCTCCAAATCCCCAGATGGAACTTGTTGGTCATTCAGTTGTTTTAACATCTCCTTATTCAGATGCACAGCATGGTCAAATCTTGACTACTTACGGGCAACAAGTTATGATAAACCCTCAATTGTACGGAATGTATCATGCTAGAATGCCTTTGCCACCTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCTGAGCTTGAAAAGAAAGTAATCAAAAACAGGAAGCCATACCTCCATGAATCCCGTCACCTTCATGCCATGAGAAGGGCTAGAGGCAATGGTGGTCGCTTTCTCAACAAAAAGAAGCTCGAAAATTACAATTCTGATGCCACTTCAGACATTGGGCAAAATACTGGTGCAAACCCCTCAACAAACTCACCTAACACTCAACATTTGTTCACCAACAATGAGAATCTAGGCTCATCAAATGCGTCACAAGCCACGGTTCAGGACATGCACAGAGTGGAGAGTTTCAATATTGGTTACCATAATGGAAATGGTCTTGCAGAACTGTACCATTCACAAGCAAATGGAAAAAAGGAGGGAAACTGCTTTGGTAAAGAGAGGGACCCTAATAATGGGGCTTTCAAATGA

Predicted protein sequences of Glyma13g27230

Limit To All Plant Sequences

>Glyma13g27230.3   sequence type=predicted peptide   gene model=Glyma13g27230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPGKADTDDWRVERGEQIQFQSSIYSHHQPWRCGVGENASKSSSADQLNGSIVNGITRSETNDKSGEGVAKEYQNIKHAVLSTPFTMDKHLAPNPQMELVGHSVVLTSPYSDAQHGQILTTYGQQVMINPQLYGMYHARMPLPPEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKNRKPYLHESRHLHAMRRARGNGGRFLNKKKLENYNSDATSDIGQNTGANPSTNSPNTQHLFTNNENLGSSNASQATVQDMHRVESFNIGYHNGNGLAELYHSQANGKKEGNCFGKERDPNNGAFK*

>Glyma13g27230.4   sequence type=predicted peptide   gene model=Glyma13g27230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPGKADTDDWRVERGEQIQFQSSIYSHHQPWRCGVGENASKSSSADQLNGSIVNGITRSETNDKSGEGVAKEYQNIKHAVLSTPFTMDKHLAPNPQMELVGHSVVLTSPYSDAQHGQILTTYGQQVMINPQLYGMYHARMPLPPEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKNRKPYLHESRHLHAMRRARGNGGRFLNKKKLENYNSDATSDIGQNTGANPSTNSPNTQHLFTNNENLGSSNASQATVQDMHRVESFNIGYHNGNGLAELYHSQANGKKEGNCFGKERDPNNGAFK*

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