SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G10720 | AT | Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein | chr4:6607879-6609358 FORWARD LENGTH=445 | SoyBase | E_val: 4.00E-31 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| KOG4412 | KOG | 26S proteasome regulatory complex, subunit PSMD10 | JGI | ISS | |
| PTHR24177 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24177:SF119 | Panther | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAININ | JGI | ISS | |
| PTHR24198 | Panther | JGI | ISS | ||
| PTHR24198:SF303 | Panther | JGI | ISS | ||
| PF00023 | PFAM | Ankyrin repeat | JGI | ISS | |
| UniRef100_B9S5T4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9S5T4_RICCO | SoyBase | E_val: 3.00E-97 | ISS |
| UniRef100_UPI000233C30F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C30F related cluster n=1 Tax=unknown RepID=UPI000233C30F | SoyBase | E_val: 0 | ISS |
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Glyma13g27195 not represented in the dataset |
Glyma13g27195 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g202000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g27195.2 sequence type=transcript gene model=Glyma13g27195 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTCACTCGTAAAATTTTGAGATATTCAAAGACATCAAGTTGCTGCATTCTGTAATCACAACCACCTGGAACGCCATTATTCAGTTCAATTGTTAGAAGTAAAAAGTTCAAGTTCTCAAAATGAGTTATGCTGATCAAGAAAATGGTTCACTGAGTGCTCTTTATGAGGTTTCATTGAGAGCTTTACTTGGCCACCTTGATTTCACAAAGTCTCTTCTCAGACACAAACCTCAACTTGCCCTTGAGTTGGACCATTCCAAACGCACCCCTCTTCATCTAGCTTCAGCACAAGGCCATGTAGAGATTGTCCATGTGTTGTTGCAAACATATCATGAACATGCTTGTTTGATGAGTGATCAAGATGGAAGAATTCCTATTCACTATGCAGCTATGAGAGGACGAACAGAAATAGCAAGACAACTGATTATGGCAAAGCCTGAGTCATTGATGGTGCTTGATGGATCAGGAAAAACTGTGTTGCACCTATGTGTTGAGCACAATCACTTGGAGACCTTGAAAACATTGGTGCAAGTGCGAGATCTTAGTGGTAATGATTTTCTAAACAAAACAGACTTGCATCATGGGAATACCATTTTGCACTTTGCTGTTACCTTGAAGCAAGTTGAGACTATAAGGTACTTGCTTTCGATACCCAAAATAAGAGAAGAAGCAAGCATTGAGAATAAGATGGGTTGTACTGCTTTGGACATGTTAGTGGATGCTGTCATAATGAACAATGGAATGAACCAAACACATTCACTACCATCACTTAATCCAAATGAAAAGTATTGGACAAAGAATTTCAAACTGGGTAAAAGGTTCTTACAACATCAGGGTGAAAGGCTGGAAGAAATGAGAGGGATGCTTAGTGTGGTAGCTACAATGATCTCAGCCATGACCTTTAATGCTGTAATGAACCCTCCAGGTGGTGTTATACAAGCAAATGGTTCAGACTTACGTAGTTGGAAAAACATGTTAAGTAATAATGTGAAGGATGCTATGGAATTACATCCTGGGAGAGCAGTATTCTTAACTACTCAAGAATCTGACTTTGAAAGTTTTGTAATGTTCAACTCCATCTCTCTGGCTGCATCACTTAGTATTACTCTCTTACTTGTGAGTGGAGTCCCCTTAAAGAATGAAGTCACCATGGGGATCTTATCAATAGGCACGTGTGTCACTCTCACATTTCTTATGCTTTCCTATTTTTTCGGAGGGTTCATGTTGGGTTTCAAGTCAGCTAATCACGTATTTCATTTTTGGATTTATCTTTGGCTTGGACTTCTTGGGCTAATTGTTGTCTTCAGCATGATCCGCGTAATTTCTTGGCTAGTAAAAGTTATCAAACATGGATAAAGGGTTTACAACTAAATCTGGGTTGTGCACACAAG
>Glyma13g27195.1 sequence type=CDS gene model=Glyma13g27195 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTATGCTGATCAAGAAAATGGTTCACTGAGTGCTCTTTATGAGGTTTCATTGAGAGGTAATGTATCTGAGTTAGACACTCTAATAGGGAGAGACCCTCTTATCCTACACAAGCTTTCATTAACAACCTTCACTGAAACTCCCTTACACATATCAGCTTTACTTGGCCACCTTGATTTCACAAAGTCTCTTCTCAGACACAAACCTCAACTTGCCCTTGAGTTGGACCATTCCAAACGCACCCCTCTTCATCTAGCTTCAGCACAAGGCCATGTAGAGATTGTCCATGTGTTGTTGCAAACATATCATGAACATGCTTGTTTGATGAGTGATCAAGATGGAAGAATTCCTATTCACTATGCAGCTATGAGAGGACGAACAGAAATAGCAAGACAACTGATTATGGCAAAGCCTGAGTCATTGATGGTGCTTGATGGATCAGGAAAAACTGTGTTGCACCTATGTGTTGAGCACAATCACTTGGAGACCTTGAAAACATTGGTGCAAGTGCGAGATCTTAGTGGTAATGATTTTCTAAACAAAACAGACTTGCATCATGGGAATACCATTTTGCACTTTGCTGTTACCTTGAAGCAAGTTGAGACTATAAGGTACTTGCTTTCGATACCCAAAATAAGAGAAGAAGCAAGCATTGAGAATAAGATGGGTTGTACTGCTTTGGACATGTTAGTGGATGCTGTCATAATGAACAATGGAATGAACCAAACACATTCACTACCATCACTTAATCCAAATGAAAAGTATTGGACAAAGAATTTCAAACTGGGTAAAAGGTTCTTACAACATCAGGGTGAAAGGCTGGAAGAAATGAGAGGGATGCTTAGTGTGGTAGCTACAATGATCTCAGCCATGACCTTTAATGCTGTAATGAACCCTCCAGGTGGTGTTATACAAGCAAATGGTTCAGACTTACGTAGTTGGAAAAACATGTTAAGTAATAATGTGAAGGATGCTATGGAATTACATCCTGGGAGAGCAGTATTCTTAACTACTCAAGAATCTGACTTTGAAAGTTTTGTAATGTTCAACTCCATCTCTCTGGCTGCATCACTTAGTATTACTCTCTTACTTGTGAGTGGAGTCCCCTTAAAGAATGAAGTCACCATGGGGATCTTATCAATAGGCACGTGTGTCACTCTCACATTTCTTATGCTTTCCTATTTTTTCGGAGGGTTCATGTTGGGTTTCAAGTCAGCTAATCACGTATTTCATTTTTGGATTTATCTTTGGCTTGGACTTCTTGGGCTAATTGTTGTCTTCAGCATGATCCGCGTAATTTCTTGGCTAGTAAAAGTTATCAAACATGGATAA >Glyma13g27195.2 sequence type=CDS gene model=Glyma13g27195 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTATGCTGATCAAGAAAATGGTTCACTGAGTGCTCTTTATGAGGTTTCATTGAGAGCTTTACTTGGCCACCTTGATTTCACAAAGTCTCTTCTCAGACACAAACCTCAACTTGCCCTTGAGTTGGACCATTCCAAACGCACCCCTCTTCATCTAGCTTCAGCACAAGGCCATGTAGAGATTGTCCATGTGTTGTTGCAAACATATCATGAACATGCTTGTTTGATGAGTGATCAAGATGGAAGAATTCCTATTCACTATGCAGCTATGAGAGGACGAACAGAAATAGCAAGACAACTGATTATGGCAAAGCCTGAGTCATTGATGGTGCTTGATGGATCAGGAAAAACTGTGTTGCACCTATGTGTTGAGCACAATCACTTGGAGACCTTGAAAACATTGGTGCAAGTGCGAGATCTTAGTGGTAATGATTTTCTAAACAAAACAGACTTGCATCATGGGAATACCATTTTGCACTTTGCTGTTACCTTGAAGCAAGTTGAGACTATAAGGTACTTGCTTTCGATACCCAAAATAAGAGAAGAAGCAAGCATTGAGAATAAGATGGGTTGTACTGCTTTGGACATGTTAGTGGATGCTGTCATAATGAACAATGGAATGAACCAAACACATTCACTACCATCACTTAATCCAAATGAAAAGTATTGGACAAAGAATTTCAAACTGGGTAAAAGGTTCTTACAACATCAGGGTGAAAGGCTGGAAGAAATGAGAGGGATGCTTAGTGTGGTAGCTACAATGATCTCAGCCATGACCTTTAATGCTGTAATGAACCCTCCAGGTGGTGTTATACAAGCAAATGGTTCAGACTTACGTAGTTGGAAAAACATGTTAAGTAATAATGTGAAGGATGCTATGGAATTACATCCTGGGAGAGCAGTATTCTTAACTACTCAAGAATCTGACTTTGAAAGTTTTGTAATGTTCAACTCCATCTCTCTGGCTGCATCACTTAGTATTACTCTCTTACTTGTGAGTGGAGTCCCCTTAAAGAATGAAGTCACCATGGGGATCTTATCAATAGGCACGTGTGTCACTCTCACATTTCTTATGCTTTCCTATTTTTTCGGAGGGTTCATGTTGGGTTTCAAGTCAGCTAATCACGTATTTCATTTTTGGATTTATCTTTGGCTTGGACTTCTTGGGCTAATTGTTGTCTTCAGCATGATCCGCGTAATTTCTTGGCTAGTAAAAGTTATCAAACATGGATAA
>Glyma13g27195.1 sequence type=predicted peptide gene model=Glyma13g27195 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSYADQENGSLSALYEVSLRGNVSELDTLIGRDPLILHKLSLTTFTETPLHISALLGHLDFTKSLLRHKPQLALELDHSKRTPLHLASAQGHVEIVHVLLQTYHEHACLMSDQDGRIPIHYAAMRGRTEIARQLIMAKPESLMVLDGSGKTVLHLCVEHNHLETLKTLVQVRDLSGNDFLNKTDLHHGNTILHFAVTLKQVETIRYLLSIPKIREEASIENKMGCTALDMLVDAVIMNNGMNQTHSLPSLNPNEKYWTKNFKLGKRFLQHQGERLEEMRGMLSVVATMISAMTFNAVMNPPGGVIQANGSDLRSWKNMLSNNVKDAMELHPGRAVFLTTQESDFESFVMFNSISLAASLSITLLLVSGVPLKNEVTMGILSIGTCVTLTFLMLSYFFGGFMLGFKSANHVFHFWIYLWLGLLGLIVVFSMIRVISWLVKVIKHG* >Glyma13g27195.2 sequence type=predicted peptide gene model=Glyma13g27195 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSYADQENGSLSALYEVSLRALLGHLDFTKSLLRHKPQLALELDHSKRTPLHLASAQGHVEIVHVLLQTYHEHACLMSDQDGRIPIHYAAMRGRTEIARQLIMAKPESLMVLDGSGKTVLHLCVEHNHLETLKTLVQVRDLSGNDFLNKTDLHHGNTILHFAVTLKQVETIRYLLSIPKIREEASIENKMGCTALDMLVDAVIMNNGMNQTHSLPSLNPNEKYWTKNFKLGKRFLQHQGERLEEMRGMLSVVATMISAMTFNAVMNPPGGVIQANGSDLRSWKNMLSNNVKDAMELHPGRAVFLTTQESDFESFVMFNSISLAASLSITLLLVSGVPLKNEVTMGILSIGTCVTLTFLMLSYFFGGFMLGFKSANHVFHFWIYLWLGLLGLIVVFSMIRVISWLVKVIKHG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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