SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G49880 | AT | Annotation by Michelle Graham. TAIR10: Erv1/Alr family protein | chr1:18464081-18465914 FORWARD LENGTH=191 | SoyBase | E_val: 1.00E-80 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0016972 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: thiol oxidase activity | SoyBase | N/A | ISS |
| GO:0042802 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: identical protein binding | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG3355 | KOG | Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins | JGI | ISS | |
| PTHR12645 | Panther | ALR/ERV | JGI | ISS | |
| PF04777 | PFAM | Erv1 / Alr family | JGI | ISS | |
| UniRef100_G7L7T4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: FAD-linked sulfhydryl oxidase ALR n=1 Tax=Medicago truncatula RepID=G7L7T4_MEDTR | SoyBase | E_val: 9.00E-101 | ISS |
| UniRef100_I1M0U8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0U8_SOYBN | SoyBase | E_val: 1.00E-144 | ISS |
|
Glyma13g26970 not represented in the dataset |
Glyma13g26970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g38020 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g199600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g26970.1 sequence type=CDS gene model=Glyma13g26970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTGAGAATCCACTGCAGACCTTGTTCCATAACATTGAACAAGTCTCAAGCTTTGTTCAACACCATCTCTCTAATTTCATAGGCCTTCATCACCACCCATCTTCAGGACCCCTCTTGTCCATCTCTTCCTCCACCAAAGGCCCACTTTCAAAAACTGCAACTTCTGTACAACTCGCTGATACTGCTGTCAAGGAAAAGTCTGCTGCCCCAGTGACTAAGGAAGAGCTTGGAAGGGCTACTTGGACTTTCCTTCACATTCTTGCAGCTCAGTACCCGGATAATCCTACAAGACAACAGAAGAAGGATGTAAAAGAACTGGTACAGATGTTACCTCGAATATACCCTTGCAGGGAATGTCGAGATCACTTTAAAGAAGTTCTTAGAGCAAATCCTGTACTGACTGGATCACATGCTGAATTTTCTCAGTGGCTATGTCATGTGCATAATGTTGTTAATAGAAGCCTTGCCAAACCGATATTCCCCTGTGAACGAGTTGATGCAAGGTGGGGCAAACTGGACTGTGAACAGAATGCATGTGAAATTATTGGAAGTACATCAATTTTTGGGAGGATATGGCAGAAATCTACGTAA
>Glyma13g26970.1 sequence type=predicted peptide gene model=Glyma13g26970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPENPLQTLFHNIEQVSSFVQHHLSNFIGLHHHPSSGPLLSISSSTKGPLSKTATSVQLADTAVKEKSAAPVTKEELGRATWTFLHILAAQYPDNPTRQQKKDVKELVQMLPRIYPCRECRDHFKEVLRANPVLTGSHAEFSQWLCHVHNVVNRSLAKPIFPCERVDARWGKLDCEQNACEIIGSTSIFGRIWQKST*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
