Glyma13g26930 - SoyBase

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Report for Sequence Feature Glyma13g26930

Feature Type:	gene_model
Chromosome:	Gm13
Start:	30118366
stop:	30128612
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g26930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54500	AT	Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 183 Blast hits to 175 proteins in 44 species: Archae - 0; Bacteria - 4; Metazoa - 38; Fungi - 11; Plants - 120; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). \| chr3:20175792-20178737 REVERSE LENGTH=648	SoyBase	E_val: 1.00E-125	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B9DGM4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5G64170 protein n=1 Tax=Arabidopsis thaliana RepID=B9DGM4_ARATH	SoyBase	E_val: 9.00E-19	ISS
UniRef100_I1M0U5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0U5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g26930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g26930

Paralog	Evidence	Comments
Glyma15g37980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g26930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g199300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g26930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g26930

Limit To All Plant Sequences

>Glyma13g26930.1   sequence type=CDS   gene model=Glyma13g26930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGATTGGAACGACGAAGAGCTCGCTAACATAGTATGGGGTGAGGCGGGTGAGAGTGATGATCATATTGTGCCTTATCCGGAGGCAAGTGAAGATCTTAATGACAAGAAAGAATGGAATCAGGAAGCTTCTGCTACTAAACTGATTGAGCAGAGGAGAATAGAGGCTAAAACTGATTTTCATCAAGGAAAGCTAGGAAGCAGTTCCAAACTTGATATTATTGAGGGATCTTCTGCCTCAGAATCTGGCACAAAGTCATGGCCTGACTTATCTTTATCCAATGCAGCTAAAACTGATCAGGGTTCCCTGGGTGCAGAAGTATCTAAAAATTTAGAAGAGACTACCCAGCTTGAAAAGGATGTAGAAAAGCAAGGTGATTTTGTCAACTATGCCTGGGATAACATAGGAAGCTTTGATGATCTTGATCGAATTTTCAGCAATGATGACCCTATATTTGGCCATGTAAGTCTTGAGAATTCTGATGAGCTGTGGTCTTCCAAAGACGTGAGTAACAGTGCAGTACCCATACTCTTGGAAGCTCCAAACCCAACAAGTGCTTTAAGCAACAGATCTGAGCCTTTGGAAATTAAAGCAGAATATGTTCAACAGAATGATCAATCATTTTCCCCTAGATTTAAGAAGATTGGCAATTCTTCATCTCATGATATTGCGAATGCTCCTGCAAACACATTCAATGTAGGATATGATAGAGATAGAATTGCCCCAGCTGATAAGGAGCAACAGGATTTTGGGCAAAATAATCAGTTGAAAGCTCGGAAAAAATCACAAGGTAAACAAGAGGTAAAAGCATTGCAGGAGTTTTATGGTAGCTGGTCTCCTTCATCAACTACATGTGGACAATTTCAGAATCAGCAGTCTTCAGTCATACAGTCTTCTCCCTCTTCAATTCTTGGGAAACGGAACCAGCTTCAAGGACCTGAGACACTATACCAGGACATCAGAAATACATATGTGACATCCTCTGCATATGAGAACCTTACAAATACATATTCTTCTATGTCAACGCTACCACAAGCACAGTCAGGAGTTCTTATGCGACAGCCTCTGCTTTCTGGGTATGAAGCATCTCTTGGTGTTATGAATCCTGTGAGCAAGTCTGTGGACTTAGTTAAGCCTCTTACAATGACTCCCCAGGAAAAAATTGAAAAATTGAGGAGGCGGCAGCAAATGCAAGCAATGCTTGCTATTCAGAAGCAACAGCAAGAATTCAGCCATCAAGTTCCTAGCTCTAATAAATCAATGAATGAAAAATGTGCCATAGAAATGCATAGTCAACTTTGTGATGGGGCTGATCCTGAAATTGAAGATTTAAGAACAACTCTAGATCCACCAACTGAGCAAGATGATTCTAATACAATCTCTCTGGCAATTGATGATCTTTTTGTTGAAGACACCATACTGTACATGCTTCAGGATGTTATATCAAAGTTAGATGTCAACATAAGACTCTGCATTAGAGATAGCTTGTTCCGGTTGGCTCAAAGTGCTATGCAAAGGAATTATGCTAGTGATACAAGCAGTACAAACAACAGTAGCAGAGAAGAACTTAAAGTTGCTGCAAGAGAAGAAAGAAGTAGCCAAAACAGATATGCTAGGATTGCTGATGTTGAAACCAAGACAAATCCCATCGATCGAACTGTAGCTCATTTGCTCTTTCATAGGCCTTTGGATTTAACTGGGAATTATCCTGATAAGCTTGAGTCACCTATTTCTGCTAAGATACAATATGAAAGCAAAGAAGCTAACCTCGAGAAGTTTCCTATGGGATGCTTGCCAGATGAGGACATGAAAAGTAATCAACAAATTTCTCCCCAAGTGCTTGAGGCCCAGCCTCAGGACCAATTTAAAAACAGTCATTGCAGAGACTCCTCAGAGAATGCTTCTAACAATGATCTAGCTGATGCTGGAGATCAGGTGCTTGAAGCCTCTCAATGA

Predicted protein sequences of Glyma13g26930

Limit To All Plant Sequences

>Glyma13g26930.1   sequence type=predicted peptide   gene model=Glyma13g26930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFDWNDEELANIVWGEAGESDDHIVPYPEASEDLNDKKEWNQEASATKLIEQRRIEAKTDFHQGKLGSSSKLDIIEGSSASESGTKSWPDLSLSNAAKTDQGSLGAEVSKNLEETTQLEKDVEKQGDFVNYAWDNIGSFDDLDRIFSNDDPIFGHVSLENSDELWSSKDVSNSAVPILLEAPNPTSALSNRSEPLEIKAEYVQQNDQSFSPRFKKIGNSSSHDIANAPANTFNVGYDRDRIAPADKEQQDFGQNNQLKARKKSQGKQEVKALQEFYGSWSPSSTTCGQFQNQQSSVIQSSPSSILGKRNQLQGPETLYQDIRNTYVTSSAYENLTNTYSSMSTLPQAQSGVLMRQPLLSGYEASLGVMNPVSKSVDLVKPLTMTPQEKIEKLRRRQQMQAMLAIQKQQQEFSHQVPSSNKSMNEKCAIEMHSQLCDGADPEIEDLRTTLDPPTEQDDSNTISLAIDDLFVEDTILYMLQDVISKLDVNIRLCIRDSLFRLAQSAMQRNYASDTSSTNNSSREELKVAAREERSSQNRYARIADVETKTNPIDRTVAHLLFHRPLDLTGNYPDKLESPISAKIQYESKEANLEKFPMGCLPDEDMKSNQQISPQVLEAQPQDQFKNSHCRDSSENASNNDLADAGDQVLEASQ*

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