Glyma13g26890 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g26890

Feature Type:	gene_model
Chromosome:	Gm13
Start:	30070998
stop:	30076596
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g26890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61790	AT	Annotation by Michelle Graham. TAIR10: Protein with RING/U-box and TRAF-like domains \| chr3:22871974-22873543 REVERSE LENGTH=326	SoyBase	E_val: 4.00E-167	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG3002	KOG	Zn finger protein	JGI		ISS
PTHR10315	Panther	SEVEN IN ABSENTIA HOMOLOG	JGI		ISS
PF03145	PFAM	Seven in absentia protein family	JGI		ISS
UniRef100_H8WVC5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin ligase-like protein n=1 Tax=Lotus japonicus RepID=H8WVC5_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_I1M0U1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0U1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g26890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g26890

Paralog	Evidence	Comments
Glyma15g37920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g26890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g198800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g26890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g26890

Limit To All Plant Sequences

>Glyma13g26890.2   sequence type=transcript   gene model=Glyma13g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAGGCAAGTGAAGGAATAGGGCAGCCAGTAGTTGCTTTTACTAGCATGGCATCAAGCAATCTATTCTTTGATGATATACGGAGCAAAGTCGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTATTAAATGATCCTGCCCAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCGTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAACATGAATCGCAATGTGCACATAGACCTTACAACTGTCCATATGCTGGTTCGGAATGCTCTATTATGGGTGACATACCCTACCTGGTGGCCCATCTGAAAGATGACCATAAAGTGGACATGCACAATGGTAGCACTTTTAATCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAACTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATGATGAGGCAAAGAATTATAGCTACAGTTTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAGGGGGTGCCTAGAAGCATCAGGGACAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAATATGGCCCTCTTTTTTTCCGGTGGTGACCGGAAGGAATTGAAGCTAAGGGTTACTGGTAGGATCTGGAAAGAACAGTGAAGGGAGAGAGATGTCCTTCCACTAGCAATTATATATAGGCTGATAGTTTGTAGTGAAACTCGTTTGTAGTGATATATGTACCTTCTGGTCTTCTAATTGTGTTTTGTAATTTAGGAGGCAAACTCTCTTTGCTTATCCTTACATCAAATACACGAACAGGAAGTTGTACCTCTAATCATTATGATGATTACGCGATAGAGATTTAGAACCTTAACGTGTTCTATATATATTATTTTTGTTCTATG

>Glyma13g26890.3   sequence type=transcript   gene model=Glyma13g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCTCGCATACGCTCTTCTCTCTCTTTCTTTAATTTGAAAATCTTTGATCAACTCTAGACGCGCATTCTTCATTTATTACAGTCTGTTGTAAAACCCACTAAAACCAACCCCCCCTCTCTCTCTGGTTTCATTAATTTTCTTCTTCTGTGATGCCCTTTTGATCAATCCATCATTCCAGGGCAGCCAGTAGTTGCTTTTACTAGCATGGCATCAAGCAATCTATTCTTTGATGATATACGGAGCAAAGTCGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTATTAAATGATCCTGCCCAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCGTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAACATGAATCGCAATGTGCACATAGACCTTACAACTGTCCATATGCTGGTTCGGAATGCTCTATTATGGGTGACATACCCTACCTGGTGGCCCATCTGAAAGATGACCATAAAGTGGACATGCACAATGGTAGCACTTTTAATCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTATTGTTTTCTAAACTTTGTTCTGCCTGCCTTCTATTGGCTCAGTAAATTCACTAGACTTTTAGTGCTTGATAGATTGTGTACTTTTGAGGCATGTTTTTGGATCTACGTGCGTTGGTCTTCATCAGTTAATAAGTATATAAAATTTAATCAAACCTTGTAACTTATGTTTAAACAAGAAAAATCCAATATTGCCAATACTGGAACATCTTGGAAACTATGAGCATCTTTTTTCAAAGTTGTATTCTCAAGAAACTATTAATTTACAGCATTGCTTCTTTGCCTTCCTAAGTGTCT

Coding sequences of Glyma13g26890

Limit To All Plant Sequences

>Glyma13g26890.1   sequence type=CDS   gene model=Glyma13g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCAAGCAATCTATTCTTTGATGATATACGGAGCAAAGTCGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTATTAAATGATCCTGCCCAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCGTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAACATGAATCGCAATGTGCACATAGACCTTACAACTGTCCATATGCTGGTTCGGAATGCTCTATTATGGGTGACATACCCTACCTGGTGGCCCATCTGAAAGATGACCATAAAGTGGACATGCACAATGGTAGCACTTTTAATCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAACTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATGATGAGGCAAAGAATTATAGCTACAGTTTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAGGGGGTGCCTAGAAGCATCAGGGACAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAATATGGCCCTCTTTTTTTCCGGTGGTGACCGGAAGGAATTGAAGCTAAGGGTTACTGGTAGGATCTGGAAAGAACAGTGA

>Glyma13g26890.2   sequence type=CDS   gene model=Glyma13g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCAAGCAATCTATTCTTTGATGATATACGGAGCAAAGTCGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTATTAAATGATCCTGCCCAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCGTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAACATGAATCGCAATGTGCACATAGACCTTACAACTGTCCATATGCTGGTTCGGAATGCTCTATTATGGGTGACATACCCTACCTGGTGGCCCATCTGAAAGATGACCATAAAGTGGACATGCACAATGGTAGCACTTTTAATCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAACTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATGATGAGGCAAAGAATTATAGCTACAGTTTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAGGGGGTGCCTAGAAGCATCAGGGACAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAATATGGCCCTCTTTTTTTCCGGTGGTGACCGGAAGGAATTGAAGCTAAGGGTTACTGGTAGGATCTGGAAAGAACAGTGA

>Glyma13g26890.3   sequence type=CDS   gene model=Glyma13g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCAAGCAATCTATTCTTTGATGATATACGGAGCAAAGTCGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTATTAAATGATCCTGCCCAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCGTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAACATGAATCGCAATGTGCACATAGACCTTACAACTGTCCATATGCTGGTTCGGAATGCTCTATTATGGGTGACATACCCTACCTGGTGGCCCATCTGAAAGATGACCATAAAGTGGACATGCACAATGGTAGCACTTTTAATCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTATTGTTTTCTAAACTTTGTTCTGCCTGCCTTCTATTGGCTCAGTAA

Predicted protein sequences of Glyma13g26890

Limit To All Plant Sequences

>Glyma13g26890.1   sequence type=predicted peptide   gene model=Glyma13g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSNLFFDDIRSKVDVDPPQNEESTDVGELLNDPAQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAHRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDDEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ*

>Glyma13g26890.2   sequence type=predicted peptide   gene model=Glyma13g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSNLFFDDIRSKVDVDPPQNEESTDVGELLNDPAQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAHRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDDEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ*

>Glyma13g26890.3   sequence type=predicted peptide   gene model=Glyma13g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSNLFFDDIRSKVDVDPPQNEESTDVGELLNDPAQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAHRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVLFSKLCSACLLLAQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain