SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G54470 | AT | Annotation by Michelle Graham. TAIR10: uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) | chr3:20168285-20170245 REVERSE LENGTH=476 | SoyBase | E_val: 0 | ISS |
| GO:0006207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: 'de novo' pyrimidine nucleobase biosynthetic process | SoyBase | N/A | ISS |
| GO:0006221 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009116 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleoside metabolic process | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0044205 | GO-bp | Annotation by Michelle Graham. GO Biological Process: 'de novo' UMP biosynthetic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004588 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: orotate phosphoribosyltransferase activity | SoyBase | N/A | ISS |
| GO:0004590 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: orotidine-5'-phosphate decarboxylase activity | SoyBase | N/A | ISS |
| KOG1377 | KOG | Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase | JGI | ISS | |
| PTHR19278 | Panther | OROTIDINE 5-PHOSPHATE DECARBOXYLASE-RELATED | JGI | ISS | |
| PTHR19278:SF21 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00156 | PFAM | Phosphoribosyl transferase domain | JGI | ISS | |
| PF00215 | PFAM | Orotidine 5'-phosphate decarboxylase / HUMPS family | JGI | ISS | |
| UniRef100_I1M0T9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0T9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q1RU71 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphoribosyltransferase; Orotidine 5-phosphate decarboxylase n=1 Tax=Medicago truncatula RepID=Q1RU71_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma13g26870 not represented in the dataset |
Glyma13g26870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g37883 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g198700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g26870.3 sequence type=transcript gene model=Glyma13g26870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTAGGTTCTTATCTTAATTCTTCAAGTAAACTCTTTCTTTCACTTTGTATTAGCTTTGCTTGGTAACTGGATTGTGGCCAATAAATCCAAACACATCGTCATAATCAATCAACATATTTCCCCTGACGACGTGGCCTCGCCTCGTTGCATCTCCAACAACACTCCCCCATTTGACTGTGTTTTGGTTGAATTAATATTGTTGGTAATCTCATTGAACTTTTAGGAGTTTAGTGAACTTTTCAATGTCATTGATTGATTCTGGCTGATTGAATTGATTTTGTTGCTCAAACAGTTTAAATGGTTAAATTTAGGTGTTTTTTGAGAGGTGGGATTTAAAATTTGTTGAATTGTGTTTGTCTATGATTTCATTTGAAATTCCGCTGAGAGCGGTACTTACATTTAGTGTTTGACTGTATTTTTAATAGGATTGTCTTTGAATAAGGAAATTTGTGGGCAAAAAGAAATGATTGCATCTGAATGATTTGGGGATTTTTCTTCTTCTGTTAAATTGGTTTGAAATGGTTATTCAATGATTATTTTTCTTCCGTTTTAGTTGTTTAGTAATTCAAGTATATTTTATAGATAGATTGAGGTTACATTTCTCAAATCTTGGTTTTAGTCCAAAAGCATATTTGGTGTGCTTGTTGTAAGTTGCATAGGACTGGATTTCAGGGGTGTGATATGGCGAAGGATAACTAGGATGTGGTGTTTCTTCTTTCCCCTCTTTCTTAATCGAGATATGGCCTGGAAGCTTTGTTTAGTAACTAGGAATGTGCTTTGTGGTTTCCTTCACAAAACAGTTTTGAGTTAAAGTGAATTCTGATTCATATGGTCACATATACAGGTTCTATATTTACAGGAGCTCCTAGAGTACATACGATGCATATTGTTCATATATAAGTTGTACCTCTCAATAACTGTACATATCAACTTTGTAACCACCGGGTAGGTTAGATTCTGTTCAGAAAAACTCAAGTCTCACATCAATTAGAGATAAGACCACAATAGAATATATAAGTGGGAGGCAACCGTCACCCCTATGAGCTAGCTTTTGGGGTTGAGTTAGGCCCAAACTCAAATTCTAAAATGGTATCATAGAGCCAAGAGCTTAACAGCAAAGTTGATCCTGTGATTCTGTGTGTAGGTGCTTGACACATGGATGCAGCCAGATTCGTCACCATCAGTGTAAGGTCTAAAATAAGCCTTGAAGTACACTGCAAAACACACATCAATGGAGTCTCTAGTTCTTCAACTCCATGAAATCTCAGCAGTCAAATTTGGCAATTTCAAGCTCAAATCTGGCATCTCCTCACCAATCTACATAGACCTCCGCCTTGCTATATCTTATCCTTCTGTCCTCCGGAATATTTCTCAAACCCTTATTTCCTCTGTCTCTTCCACTTCATTTGACCTTGTCTGTGGTGTCCCTTACACTGCTCTGCCCATTGCCACTTGTGTCTCTGTTACTCAGAACATCCCCATGGTCATGCGCCGCAAGGAAATAAAAGATTATGGCACTTCTAAAGCTATTGAAGGAGATTTCAAGCATGGCCAAAGTTGCTTGATAATTGAGGATCTAGTTACTAGTGGCACATCAGTTTTGGAAACTGCTGCACCACTGCGTGCCACAGGGTTGAAGGTCAGTGATGCTGTGGTTTTGATTGATAGAGAGCAAGGTGGGAGAGAGAATTTGGAGAGTAATGGAATCAAGCTGCATGCAATTCTCAAATTGACTGAAATGGTGAAAATTTTGAGGGAAAAAGGAAAGCTTGATAAGCAGATGCTAGGGGTTGTTATGAGATTCTTAGAAGAGAATCAAAAGGTCGCTGCTTTGGCAACTACAGCTAAGGTCAAGGCCTTCACATTTATGGAGAGGGCTAAGTTGTCCAAGAATCCAACAGGAAAGAGGTTGTTTGAGATAATGGCCAAGAAGGAGAGTAATCTGTGTTTGGCTGCAGATGTTGGAACTGCAGCTGAATTGCTTGAAATTGCTGACAAGGTTGGGCCTGAGATATGCTTGCTGAAAACTCACGTTGATATTTTACCTGATTTTACTCCTGATTTCGGTTCTAAGCTTCGCTTGATTGCAGAAAAACATAACTTCTTAATCTTTGAGGATCGTAAGTTTGCTGACATTGGTAACACGGTGACCATGCAATATGAAGGAGGAATCTTTCATATATTGGAATGGGCTGATATAGTAAATGCTCACATTATATCTGGTCCTGGAATTGTGGAAGGACTGAAGTTGAAGGGTTTGCCTCGTGGAAGGGGTCTATTGCTGCTTGCTGAAATGAGTTCAGCTGGTAACCTTGCCAAGGGAGATTACACCACTGCTGCGGTGAAAATTGCTGAGGATCACTCTGACTTTGTTATTGGCTTCATCTCAGTCAATCCTGCATCATGGCCTGGAGCACCCATAAATCCCTCTTTTGTTCATGCAACTCCTGGAGTTCAAATGGTGACTGGTGGTGATGCTTTAGGACAACAATATAGTACACCGCATTCTGTTGTCTATGATGGGGGTAGTGACATTATCATAGTAGGTCGTGGCATCATCAAGGCAGCAAATCCAGCTCAGGCAGCTCGCGAATACCGTCTTCAAGGATGGAATGCGTATTTGGCTAAGTGCAGCTGAAGCCTGCATTCTCAGACTAATTGGATGAGGCTAAGTTGTATTTCATTTCACCTCAGTATATATATAACTTCTAAAAATGTAAGCAGCACTTGAGTTTTCTTTTCTTTTCTTCTTGTTTCCTTCCCTCCCATTTTGGCTAGAAAATATTTGCGGTTCAGCTAGCTATCTGGATCTTCCAAACGAAGTGCTTCATTTTATGATTTTCCTTAGCATGTAATAGGTTGAATAATGCATTTCACATCAATTTTTTACATCTTTTTTTCTTTCATGGGACCAAACTAATGCATACCATTCAATGTAATTAATCTTATGGATTATTGATCCACATGGGATCAATTACCAAATATTGACTGGTTTGGTGTGGTCTAAAATATATTACCGGTA
>Glyma13g26870.2 sequence type=CDS gene model=Glyma13g26870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCTCTAGTTCTTCAACTCCATGAAATCTCAGCAGTCAAATTTGGCAATTTCAAGCTCAAATCTGGCATCTCCTCACCAATCTACATAGACCTCCGCCTTGCTATATCTTATCCTTCTGTCCTCCGGAATATTTCTCAAACCCTTATTTCCTCTGTCTCTTCCACTTCATTTGACCTTGTCTGTGGTGTCCCTTACACTGCTCTGCCCATTGCCACTTGTGTCTCTGTTACTCAGAACATCCCCATGGTCATGCGCCGCAAGGAAATAAAAGATTATGGCACTTCTAAAGCTATTGAAGGAGATTTCAAGCATGGCCAAAGTTGCTTGATAATTGAGGATCTAGTTACTAGTGGCACATCAGTTTTGGAAACTGCTGCACCACTGCGTGCCACAGGGTTGAAGGTCAGTGATGCTGTGGTTTTGATTGATAGAGAGCAAGGTGGGAGAGAGAATTTGGAGAGTAATGGAATCAAGCTGCATGCAATTCTCAAATTGACTGAAATGGTGAAAATTTTGAGGGAAAAAGGAAAGCTTGATAAGCAGATGCTAGGGGTTGTTATGAGATTCTTAGAAGAGAATCAAAAGGTCGCTGCTTTGGCAACTACAGCTAAGGTCAAGGCCTTCACATTTATGGAGAGGGCTAAGTTGTCCAAGAATCCAACAGGAAAGAGGTTGTTTGAGATAATGGCCAAGAAGGAGAGTAATCTGTGTTTGGCTGCAGATGTTGGAACTGCAGCTGAATTGCTTGAAATTGCTGACAAGGTTGGGCCTGAGATATGCTTGCTGAAAACTCACGTTGATATTTTACCTGATTTTACTCCTGATTTCGGTTCTAAGCTTCGCTTGATTGCAGAAAAACATAACTTCTTAATCTTTGAGGATCGTAAGTTTGCTGACATTGGTAACACGGTGACCATGCAATATGAAGGAGGAATCTTTCATATATTGGAATGGGCTGATATAGTAAATGCTCACATTATATCTGGTCCTGGAATTGTGGAAGGACTGAAGTTGAAGGGTTTGCCTCGTGGAAGGGGTCTATTGCTGCTTGCTGAAATGAGTTCAGCTGGTAACCTTGCCAAGGGAGATTACACCACTGCTGCGGTGAAAATTGCTGAGGATCACTCTGACTTTGTTATTGGCTTCATCTCAGTCAATCCTGCATCATGGCCTGGAGCACCCATAAATCCCTCTTTTGTTCATGCAACTCCTGGAGTTCAAATGGTGACTGGTGGTGATGCTTTAGGACAACAATATAGTACACCGCATTCTGTTGTCTATGATGGGGGTAGTGACATTATCATAGTAGGTCGTGGCATCATCAAGGCAGCAAATCCAGCTCAGGCAGCTCGCGAATACCGTCTTCAAGGATGGAATGCGTATTTGGCTAAGTGCAGCTGA >Glyma13g26870.3 sequence type=CDS gene model=Glyma13g26870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCTCTAGTTCTTCAACTCCATGAAATCTCAGCAGTCAAATTTGGCAATTTCAAGCTCAAATCTGGCATCTCCTCACCAATCTACATAGACCTCCGCCTTGCTATATCTTATCCTTCTGTCCTCCGGAATATTTCTCAAACCCTTATTTCCTCTGTCTCTTCCACTTCATTTGACCTTGTCTGTGGTGTCCCTTACACTGCTCTGCCCATTGCCACTTGTGTCTCTGTTACTCAGAACATCCCCATGGTCATGCGCCGCAAGGAAATAAAAGATTATGGCACTTCTAAAGCTATTGAAGGAGATTTCAAGCATGGCCAAAGTTGCTTGATAATTGAGGATCTAGTTACTAGTGGCACATCAGTTTTGGAAACTGCTGCACCACTGCGTGCCACAGGGTTGAAGGTCAGTGATGCTGTGGTTTTGATTGATAGAGAGCAAGGTGGGAGAGAGAATTTGGAGAGTAATGGAATCAAGCTGCATGCAATTCTCAAATTGACTGAAATGGTGAAAATTTTGAGGGAAAAAGGAAAGCTTGATAAGCAGATGCTAGGGGTTGTTATGAGATTCTTAGAAGAGAATCAAAAGGTCGCTGCTTTGGCAACTACAGCTAAGGTCAAGGCCTTCACATTTATGGAGAGGGCTAAGTTGTCCAAGAATCCAACAGGAAAGAGGTTGTTTGAGATAATGGCCAAGAAGGAGAGTAATCTGTGTTTGGCTGCAGATGTTGGAACTGCAGCTGAATTGCTTGAAATTGCTGACAAGGTTGGGCCTGAGATATGCTTGCTGAAAACTCACGTTGATATTTTACCTGATTTTACTCCTGATTTCGGTTCTAAGCTTCGCTTGATTGCAGAAAAACATAACTTCTTAATCTTTGAGGATCGTAAGTTTGCTGACATTGGTAACACGGTGACCATGCAATATGAAGGAGGAATCTTTCATATATTGGAATGGGCTGATATAGTAAATGCTCACATTATATCTGGTCCTGGAATTGTGGAAGGACTGAAGTTGAAGGGTTTGCCTCGTGGAAGGGGTCTATTGCTGCTTGCTGAAATGAGTTCAGCTGGTAACCTTGCCAAGGGAGATTACACCACTGCTGCGGTGAAAATTGCTGAGGATCACTCTGACTTTGTTATTGGCTTCATCTCAGTCAATCCTGCATCATGGCCTGGAGCACCCATAAATCCCTCTTTTGTTCATGCAACTCCTGGAGTTCAAATGGTGACTGGTGGTGATGCTTTAGGACAACAATATAGTACACCGCATTCTGTTGTCTATGATGGGGGTAGTGACATTATCATAGTAGGTCGTGGCATCATCAAGGCAGCAAATCCAGCTCAGGCAGCTCGCGAATACCGTCTTCAAGGATGGAATGCGTATTTGGCTAAGTGCAGCTGA
>Glyma13g26870.2 sequence type=predicted peptide gene model=Glyma13g26870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESLVLQLHEISAVKFGNFKLKSGISSPIYIDLRLAISYPSVLRNISQTLISSVSSTSFDLVCGVPYTALPIATCVSVTQNIPMVMRRKEIKDYGTSKAIEGDFKHGQSCLIIEDLVTSGTSVLETAAPLRATGLKVSDAVVLIDREQGGRENLESNGIKLHAILKLTEMVKILREKGKLDKQMLGVVMRFLEENQKVAALATTAKVKAFTFMERAKLSKNPTGKRLFEIMAKKESNLCLAADVGTAAELLEIADKVGPEICLLKTHVDILPDFTPDFGSKLRLIAEKHNFLIFEDRKFADIGNTVTMQYEGGIFHILEWADIVNAHIISGPGIVEGLKLKGLPRGRGLLLLAEMSSAGNLAKGDYTTAAVKIAEDHSDFVIGFISVNPASWPGAPINPSFVHATPGVQMVTGGDALGQQYSTPHSVVYDGGSDIIIVGRGIIKAANPAQAAREYRLQGWNAYLAKCS* >Glyma13g26870.3 sequence type=predicted peptide gene model=Glyma13g26870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESLVLQLHEISAVKFGNFKLKSGISSPIYIDLRLAISYPSVLRNISQTLISSVSSTSFDLVCGVPYTALPIATCVSVTQNIPMVMRRKEIKDYGTSKAIEGDFKHGQSCLIIEDLVTSGTSVLETAAPLRATGLKVSDAVVLIDREQGGRENLESNGIKLHAILKLTEMVKILREKGKLDKQMLGVVMRFLEENQKVAALATTAKVKAFTFMERAKLSKNPTGKRLFEIMAKKESNLCLAADVGTAAELLEIADKVGPEICLLKTHVDILPDFTPDFGSKLRLIAEKHNFLIFEDRKFADIGNTVTMQYEGGIFHILEWADIVNAHIISGPGIVEGLKLKGLPRGRGLLLLAEMSSAGNLAKGDYTTAAVKIAEDHSDFVIGFISVNPASWPGAPINPSFVHATPGVQMVTGGDALGQQYSTPHSVVYDGGSDIIIVGRGIIKAANPAQAAREYRLQGWNAYLAKCS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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