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Report for Sequence Feature Glyma13g26861

Feature Type:gene_model
Chromosome:Gm13
Start:30052871
stop:30059692
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g26861
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07940AT Annotation by Michelle Graham. TAIR10: Calcium-dependent ARF-type GTPase activating protein family | chr3:2529542-2531368 FORWARD LENGTH=385 SoyBaseE_val: 2.00E-172ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1030 KOG Predicted Ca2+-dependent phospholipid-binding protein JGI ISS
PTHR23180Panther CENTAURIN/ARF JGI ISS
PTHR23180:SF25Panther CENTAURIN/ARF-RELATED JGI ISS
PF00168PFAM C2 domain JGI ISS
PF01412PFAM Putative GTPase activating protein for Arf JGI ISS
UniRef100_G7IYV8UniRef Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor GTPase-activating protein n=1 Tax=Medicago truncatula RepID=G7IYV8_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233C304UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C304 related cluster n=1 Tax=unknown RepID=UPI000233C304 SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g26861
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g26861 not represented in the dataset
Glyma13g26861 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g26861
ParalogEvidenceComments
Glyma15g37876 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g26861 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g198600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g26861
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma13g26861
>Glyma13g26861.2   sequence type=transcript   gene model=Glyma13g26861   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCAGATCTGTCTCGTTTCCCCGAAACCTGTGATTTGTTGCCACTTCCAAAAACCATCACATTTTGCTTGTCAAATGAATTTCCAAGTTTCTTTATTTTCTTATTCAATGCATATTTATCAAAGCTTCAAGCTTTCACCTTCATTGGTTGACAAAAACCAATTTTCTCAAAGACCCTTTTGAATATTTCCAGACTCAGAAAAAGAATTCATTTTTGGCTTCTTCTTAATTCACAAAATTTAAGAGGAAAAAGATATATTCTAATATAGAAGCAACTGACATATGGCTGGTCACAGATTGTAGCACCATATTTTCCTTTGGGTTTCAGATATTGGAGGCCCGTTGGGTTCCAAATATTAGAGGCCAGATATGTCTATACAACATGAAAATCCTGAGACAAAAGATGTAATATGTCCACAGAAAAGGATAGCAGATCTTATGCATCACGCTGGAAACAAGTTTTGCGCTGATTGTGGAACACCAGAGCCAAGATGGGTGTCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGTCTAGGAGTCCACATATCAAAGGTTCTATCACTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTAGCAAAGTTGGGTGGCAATACATTATTAAATAAGAAGTACGAAGCTTGCCTTCCAAGTAACATAAGAAAACCAAAACCACATTCATCCATTGAGGAGCGCTCTGAATTTATTCGGAGAAAATATGAGATGCAGCAATTTGTCGACTGTGATGACAATTTGTCATGCCCCATTATCCCATCTCAAGGAAGAAGCATATCACTTGCTCTTGCTCAGAGTAGCACTTCATACTACAATTCTTTTATGGACAAGAAACCATCTGAAAAACAACAAAGCAAACATCGTATTGGGAACGCATTCCGAAACAGCTGGGGAAGAAAAGATTCTGAGCACAAGGCTGCAAAGAAGAGTACCTCTTTGGCAGGTATGGTTGAATTTGTTGGGCTGATTAAGGTTAATGTGGTTAAAGGCACTCACCTAGCCATTCGAGATGTAATGACTAGTGACCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAAAACACGTGTCATAAAGAGCAATTTGAATCCGGTTTGGAATGAGAGCCTAATGCTATCAATTCCAGAGAACATTCCTCCTCTAAAAGTGCTTGTGTATGACAAGGATACATTTTCAACTGATGATTTTATGGGGGAGGCTGAAATAGACATTCAACCTCTAGTTATTGCCGCAAAGGCCTACGAGAAATCGAATATTAATGAGTCCATGCAACTTGGGAAATTTGTAGCAAGCAACGACAACACCCTTGTTAGAGATGGTATCATATCTCTTGATGAAGGGAAAATCAAACAGGAAATCTCAGTTAGGCTACAAAATATTGAGAGGGGTGAGTTGGAGCTTGAGCTTGAGTGTGTTCCCCTTACTCAATAGCTGGATAAATGTTAAGGATCATAACTCAATTGAAATCACATTTTGGAGAAATCACATTTTGGAGCACAAATCATAGGAATTTGTATGTGTAGATAGTCCTGTCTCATTCTCTCTTGTACATTATTCCATGACTTTGATGGGATTACTTCACTATCCAAGTTTCTAACTTTTTTTCCTGAGTACTGGTATCTTAAGAACCTCATGAAGAATAATATCTTAAGAATTTGGTCTTTAAGTCTAATGAGGTCATGTGATCCATCTCCTAGTGAGATAAAGTTTTTGTTGTTGTACTTGTATCTTAAGGAGTTACCTTAATTTGTTAATAATGTTTTAT
Coding sequences of Glyma13g26861
>Glyma13g26861.1   sequence type=CDS   gene model=Glyma13g26861   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTATACAACATGAAAATCCTGAGACAAAAGATGTAATATGTCCACAGAAAAGGATAGCAGATCTTATGCATCACGCTGGAAACAAGTTTTGCGCTGATTGTGGAACACCAGAGCCAAGATGGGTGTCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGTCTAGGAGTCCACATATCAAAGGTTCTATCACTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTAGCAAAGTTGGGTGGCAATACATTATTAAATAAGAAGTACGAAGCTTGCCTTCCAAGTAACATAAGAAAACCAAAACCACATTCATCCATTGAGGAGCGCTCTGAATTTATTCGGAGAAAATATGAGATGCAGCAATTTGTCGACTGTGATGACAATTTGTCATGCCCCATTATCCCATCTCAAGGAAGAAGCATATCACTTGCTCTTGCTCAGAGTAGCACTTCATACTACAATTCTTTTATGGACAAGAAACCATCTGAAAAACAACAAAGCAAACATCGTATTGGGAACGCATTCCGAAACAGCTGGGGAAGAAAAGATTCTGAGCACAAGGCTGCAAAGAAGAGTACCTCTTTGGCAGGTATGGTTGAATTTGTTGGGCTGATTAAGGTTAATGTGGTTAAAGGCACTCACCTAGCCATTCGAGATGTAATGACTAGTGACCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAAAACACGTGTCATAAAGAGCAATTTGAATCCGGTTTGGAATGAGAGCCTAATGCTATCAATTCCAGAGAACATTCCTCCTCTAAAAGTGCTTGTGTATGACAAGGATACATTTTCAACTGATGATTTTATGGGGGAGGCTGAAATAGACATTCAACCTCTAGTTATTGCCGCAAAGGCCTACGAGAAATCGAATATTAATGAGTCCATGCAACTTGGGAAATTTGTAGCAAGCAACGACAACACCCTTGTTAGAGATGGTATCATATCTCTTGATGAAGGGAAAATCAAACAGGAAATCTCAGTTAGGCTACAAAATATTGAGAGGGGTGAGTTGGAGCTTGAGCTTGAGTGTGTTCCCCTTACTCAATAG

>Glyma13g26861.2   sequence type=CDS   gene model=Glyma13g26861   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTATACAACATGAAAATCCTGAGACAAAAGATGTAATATGTCCACAGAAAAGGATAGCAGATCTTATGCATCACGCTGGAAACAAGTTTTGCGCTGATTGTGGAACACCAGAGCCAAGATGGGTGTCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGTCTAGGAGTCCACATATCAAAGGTTCTATCACTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTAGCAAAGTTGGGTGGCAATACATTATTAAATAAGAAGTACGAAGCTTGCCTTCCAAGTAACATAAGAAAACCAAAACCACATTCATCCATTGAGGAGCGCTCTGAATTTATTCGGAGAAAATATGAGATGCAGCAATTTGTCGACTGTGATGACAATTTGTCATGCCCCATTATCCCATCTCAAGGAAGAAGCATATCACTTGCTCTTGCTCAGAGTAGCACTTCATACTACAATTCTTTTATGGACAAGAAACCATCTGAAAAACAACAAAGCAAACATCGTATTGGGAACGCATTCCGAAACAGCTGGGGAAGAAAAGATTCTGAGCACAAGGCTGCAAAGAAGAGTACCTCTTTGGCAGGTATGGTTGAATTTGTTGGGCTGATTAAGGTTAATGTGGTTAAAGGCACTCACCTAGCCATTCGAGATGTAATGACTAGTGACCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAAAACACGTGTCATAAAGAGCAATTTGAATCCGGTTTGGAATGAGAGCCTAATGCTATCAATTCCAGAGAACATTCCTCCTCTAAAAGTGCTTGTGTATGACAAGGATACATTTTCAACTGATGATTTTATGGGGGAGGCTGAAATAGACATTCAACCTCTAGTTATTGCCGCAAAGGCCTACGAGAAATCGAATATTAATGAGTCCATGCAACTTGGGAAATTTGTAGCAAGCAACGACAACACCCTTGTTAGAGATGGTATCATATCTCTTGATGAAGGGAAAATCAAACAGGAAATCTCAGTTAGGCTACAAAATATTGAGAGGGGTGAGTTGGAGCTTGAGCTTGAGTGTGTTCCCCTTACTCAATAG
Predicted protein sequences of Glyma13g26861
>Glyma13g26861.1   sequence type=predicted peptide   gene model=Glyma13g26861   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIQHENPETKDVICPQKRIADLMHHAGNKFCADCGTPEPRWVSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALAKLGGNTLLNKKYEACLPSNIRKPKPHSSIEERSEFIRRKYEMQQFVDCDDNLSCPIIPSQGRSISLALAQSSTSYYNSFMDKKPSEKQQSKHRIGNAFRNSWGRKDSEHKAAKKSTSLAGMVEFVGLIKVNVVKGTHLAIRDVMTSDPYVILSLGHQSVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVIAAKAYEKSNINESMQLGKFVASNDNTLVRDGIISLDEGKIKQEISVRLQNIERGELELELECVPLTQ*

>Glyma13g26861.2   sequence type=predicted peptide   gene model=Glyma13g26861   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIQHENPETKDVICPQKRIADLMHHAGNKFCADCGTPEPRWVSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALAKLGGNTLLNKKYEACLPSNIRKPKPHSSIEERSEFIRRKYEMQQFVDCDDNLSCPIIPSQGRSISLALAQSSTSYYNSFMDKKPSEKQQSKHRIGNAFRNSWGRKDSEHKAAKKSTSLAGMVEFVGLIKVNVVKGTHLAIRDVMTSDPYVILSLGHQSVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVIAAKAYEKSNINESMQLGKFVASNDNTLVRDGIISLDEGKIKQEISVRLQNIERGELELELECVPLTQ*






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