SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G03780 | AT | Annotation by Michelle Graham. TAIR10: TRF-like 10 | chr5:999266-1000947 REVERSE LENGTH=420 | SoyBase | E_val: 3.00E-26 | ISS |
| GO:0006302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair | SoyBase | N/A | ISS |
| GO:0009751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| PTHR21717 | Panther | TELOMERIC REPEAT BINDING PROTEIN | JGI | ISS | |
| UniRef100_E6NTZ6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: JHL20J20.13 protein n=1 Tax=Jatropha curcas RepID=E6NTZ6_9ROSI | SoyBase | E_val: 5.00E-33 | ISS |
| UniRef100_UPI000233C1A6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C1A6 related cluster n=1 Tax=unknown RepID=UPI000233C1A6 | SoyBase | E_val: 0 | ISS |
|
Glyma13g26790 not represented in the dataset |
Glyma13g26790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g37810 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g197800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g26790.2 sequence type=CDS gene model=Glyma13g26790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAAGAAAGAGCAGGGGCAAACGTAGGCGTGCGGCATCTGCAACAACTCTGAGTCCTTCTTCCCTCTCCGCCATTCCCATTCTTTGGGATGCGTATGATACCATCTGCATTCACTGCAATAACAAAGGCGAGGAGGCCAAGGAGGATGGACTTTTGATTTGCAGCGGAAGGGGCTGCCCCGTCGCTGTCCATGCCACCTGCCTCGCCACCGGACCTAAATTTGACGGTTCCGGTAACTTCTGCTGCCCCTACTGCTGGTACAAGCGCGCCGTTGACACGTGTCGACGCCTCAGGGAGAAGGCCCTGGAAGCCAAGGGAGACTTGTCACGCTTTCTGGACAATCACGACCACGCACGTGCGGCTGCACATGTGGATCTGGTTGTTCAGGATAGTGAAGAACTCATGGAGGAAACAGGAACACAAGCACAGTCTAAAGATAATAAAGATGAGGAGGGAGAGGCACGTGTGAATCAGGTTCATGATAGGGAAGAAACTGAGACAGAACCAGAAGGGAATAAAGAAAAGGAGGGAAAGGTTCGGGATAATGAAGAACTCGTGGAAGAAAGAGAAAGAAAAACAGTGACAGAAGCACAATCTCAAGAGAATAAAGCTGAGGAGGATAAGTTTCAAGATGATAGTGAAGAACTCGTGGTGGAAACAGAAACAGAAACAGAAGTTCAGTGTGAAGAGAATAAAGAGGAGGGTAAGGTTCGGGATAGTGAAGAACATGTGGAGGAAATGGAAACAGAAACAGGAGCAGAAGCGCAACCTGAAGAGAAGAAAGATGAGGGTAAGGTTCGGGACAGTGAAAAACTCGTGGAGGAAACGCAAACGGAAACAGAAGGACAATCTGAAGAGAAGAAAGATGAGGAGGGAAAGGTGGCTGTGATGAGTAGTTCTGTGAGTGAGACCTATGATTCGGATTCTGTGGCTGTATCGATGAAGAAAAGGAAGGATAAGAAGAAGAAGGTTACTTCCGCAAGGAAATCTTTGTCGTTACAACAAGAGCATAAGAATAAGCATTATAAGACTAGAGGGAAAGTTGCCAACGAGGAGGAAGTTACCAGCTTCAAAACTACGAGTTTGGGGCAGCAACCACAGAGAATGAAGCAGAGTTCACTGGCTGCAAAGCGTAAGAGATTACTTTGGACAGCAGAAGAAGAAAAAGTTCTCAAGGAAGGAGTATCAAAGTTCTCCACAGAAAATCAGAATATCCCTTGGAGGAAAATTTTGGAATTTGGCTGTCGTGTATTTGATGAGACTCGTACTCCTGTTGATCTCAAGGATAAATGGAAGAACATTATCTCCAAGAAAAGTAGAAGTACTGATTGTAGTTATACTTTTGATTTATAA
>Glyma13g26790.2 sequence type=predicted peptide gene model=Glyma13g26790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRRKSRGKRRRAASATTLSPSSLSAIPILWDAYDTICIHCNNKGEEAKEDGLLICSGRGCPVAVHATCLATGPKFDGSGNFCCPYCWYKRAVDTCRRLREKALEAKGDLSRFLDNHDHARAAAHVDLVVQDSEELMEETGTQAQSKDNKDEEGEARVNQVHDREETETEPEGNKEKEGKVRDNEELVEERERKTVTEAQSQENKAEEDKFQDDSEELVVETETETEVQCEENKEEGKVRDSEEHVEEMETETGAEAQPEEKKDEGKVRDSEKLVEETQTETEGQSEEKKDEEGKVAVMSSSVSETYDSDSVAVSMKKRKDKKKKVTSARKSLSLQQEHKNKHYKTRGKVANEEEVTSFKTTSLGQQPQRMKQSSLAAKRKRLLWTAEEEKVLKEGVSKFSTENQNIPWRKILEFGCRVFDETRTPVDLKDKWKNIISKKSRSTDCSYTFDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
