Glyma13g26730 - SoyBase

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Report for Sequence Feature Glyma13g26730

Feature Type:	gene_model
Chromosome:	Gm13
Start:	29927999
stop:	29933529
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g26730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G12330	AT	Annotation by Michelle Graham. TAIR10: Lateral root primordium (LRP) protein-related \| chr5:3987677-3989074 REVERSE LENGTH=320	SoyBase	E_val: 3.00E-60	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
PF05142	PFAM	Domain of unknown function (DUF702)	JGI		ISS
UniRef100_G7J0K6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Short internodes n=1 Tax=Medicago truncatula RepID=G7J0K6_MEDTR	SoyBase	E_val: 1.00E-113	ISS
UniRef100_I1M0S8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0S8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g26730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g26730 not represented in the dataset	Glyma13g26730 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g26730

Paralog	Evidence	Comments
Glyma15g37600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g26730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g197300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g26730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g26730

Limit To All Plant Sequences

>Glyma13g26730.2   sequence type=transcript   gene model=Glyma13g26730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGAGGGTTTAGGTTTAACTACACTTGCAGGCACCACAAAAAACTCCACCTATAATTACCATTCCAAGAATATCTGTTAAGTGGAGTTTCAGTGTCAGAAGAAAAACCTGTAGCAGTAATGTCTTTTTGCACCAAAACAAAAACTAGTAAAACTCCCTCTTCTGAATCCTAAACAACACAAAATCACAAACACCAAATCATCACTCATACACCACAGTTTCCAATTTCCATCAATCTCAATCTCATCCTCTCCTAACATTCTCCCTATAAAATCGCCACATCCAACTCCCAACAACACAACACCAACAACCTCAAAAAACATAATTAAGCATTAACATTCCACACCTTTTCACACACACACAAAAAAAACAACCCTCTAAAATCTAAGCCTCAAAGAGTGCTAAACTTTGTTACAATGAACATGTTAGGCCTTAGAGACCTAGTTTTCATAGCTCCAACTCCTTCTCAACTTCACCACCATCAACAACACCAACCCATTTCAGCAGAACACCATTCAAACCTCCCTTTGCCTTCACAAGCCTCTCTCAGTGTTGGTCTTGGCATTTTCCCTCTCCTAACAGTGCCACACACCAATGATGTTCAAGTTCAGGTTCAAGACTGTGCCAACAACAACAACAACACCAACACCAACTATTGGAACCTGAAGATGTGTGGTGCCACTGAAGTGAATTCCACAAGAAAAGGTGTTATGAACATGGAGGATGAGGGAAGCAATAAGCAAATGATGGAGAGTGAGGAAGGTGGGGGTGAGTTTAGGGTGTGCCAGGATTGTGGCAATAGAGCCAAGAGAGATTGCAGCTTCAGAAGGTGCAGGACTTGCTGCAAGGGACGTGGCTTTGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCCGCGTCTATGAGACGGGGTGGTGGTGGTGATAGTAGTGGTGGTGATGGCAACAGCGATGCTGGTGCTTCTAAGAGGCTAAGAACTTTGGGGTCATCAAAGAATGTTGCTGCTAGTGCTACCTCTCATAGTTCCACTTCCAATGCTACCCCAACAAAGAGCTTTGATACCAGTTCTTGTCAACAAGATGCTGGTTTCAAACAGTCTTTGCCACGGCACGTGCGTGCACCTGCGGTTTTTAGGTGCCATAGAGTGTCTGCTATTGGGAGTGGTGAAGATGAGATTGTTTACATGGCCACAGTTCATATTAGTGGCCATGTTTTTAAGGGGTTTCTGTATGATCATGGTGCTGATGCCAGAAATGATGTGCCTAGTGTCTCAGAACTGCAATTGGGAAACAATGGAAGTGGAAAGAATAATAATAGGGAATGCTCTTCTGCAATTGGGGTTCCAACTAGTGCTTACCCTGCTTCTGTTTGCTGAGGTTGCTGAAAGGTGACTGCATACAAGAGGTGTTCAAGTATCATTATCCAAAATTT

>Glyma13g26730.3   sequence type=transcript   gene model=Glyma13g26730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGAGGGTTTAGGTTTAACTACACTTGCAGGCACCACAAAAAACTCCACCTATAATTACCATTCCAAGAATATCTGTTAAGTGGAGTTTCAGTGTCAGAAGAAAAACCTGTAGCAGTAATGTCTTTTTGCACCAAAACAAAAACTAGTAAAACTCCCTCTTCTGAATCCTAAACAACACAAAATCACAAACACCAAATCATCACTCATACACCACAGTTTCCAATTTCCATCAATCTCAATCTCATCCTCTCCTAACATTCTCCCTATAAAATCGCCACATCCAACTCCCAACAACACAACACCAACAACCTCAAAAAACATAATTAAGCATTAACATTCCACACCTTTTCACACACACACAAAAAAAACAACCCTCTAAAATCTAAGCCTCAAAGAGTGCTAAACTTTGTTACAATGAACATGTTAGGCCTTAGAGACCTAGTTTTCATAGCTCCAACTCCTTCTCAACTTCACCACCATCAACAACACCAACCCATTTCAGCAGAACACCATTCAAACCTCCCTTTGCCTTCACAAGCCTCTCTCAGTGTTGGTCTTGGCATTTTCCCTCTCCTAACAGTGCCACACACCAATGATGTTCAAGTTCAGGTTCAAGACTGTGCCAACAACAACAACAACACCAACACCAACTATTGGAACCTGAAGATGTGTGGTGCCACTGAAGTGAATTCCACAAGAAAAGGTGTTATGAACATGGAGGATGAGGGAAGCAATAAGCAAATGATGGAGAGTGAGGAAGGTGGGGGTGAGTTTAGGGTGTGCCAGGATTGTGGCAATAGAGCCAAGAGAGATTGCAGCTTCAGAAGGTGCAGGACTTGCTGCAAGGGACGTGGCTTTGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCCGCGTCTATGAGACGGGGTGGTGGTGGTGATAGTAGTGGTGGTGATGGCAACAGCGATGCTGGTGCTTCTAAGAGGCTAAGAACTTTGGGGTCATCAAAGAATGTTGCTGCTAGTGCTACCTCTCATAGTTCCACTTCCAATGCTACCCCAACAAAGAGCTTTGATACCAGTTCTTGTCAACAAGATGCTGGTTTCAAACAGTCTTTGCCACGGCACGTGCGTGCACCTGCGGTTTTTAGGTGCCATAGAGTGTCTGCTATTGGGAGTGGTGAAGATGAGATTGTTTACATGGCCACAGTTCATATTAGTGGCCATGTTTTTAAGGGGTTTCTGTATGATCATGGTGCTGATGCCAGAAATGATGTGCCTAGTGTCTCAGAACTGCAATTGGGAAACAATGGAAGTGGAAAGAATAATAATAGGGAATGCTCTTCTGCAATTGGGGTTCCAACTAGTGCTTACCCTGCTTCTGTTTGCTGAGGTTGCTGAAAGGTACAAAATTGGCCTAGCTTTAATTTAAGTAACATTCAGCAC

Coding sequences of Glyma13g26730

Limit To All Plant Sequences

>Glyma13g26730.1   sequence type=CDS   gene model=Glyma13g26730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGTTAGGCCTTAGAGACCTAGTTTTCATAGCTCCAACTCCTTCTCAACTTCACCACCATCAACAACACCAACCCATTTCAGCAGAACACCATTCAAACCTCCCTTTGCCTTCACAAGCCTCTCTCAGTGTTGGTCTTGGCATTTTCCCTCTCCTAACAGTGCCACACACCAATGATGTTCAAGTTCAGGTTCAAGACTGTGCCAACAACAACAACAACACCAACACCAACTATTGGAACCTGAAGATGTGTGGTGCCACTGAAGTGAATTCCACAAGAAAAGGTGTTATGAACATGGAGGATGAGGGAAGCAATAAGCAAATGATGGAGAGTGAGGAAGGTGGGGGTGAGTTTAGGGTGTGCCAGGATTGTGGCAATAGAGCCAAGAGAGATTGCAGCTTCAGAAGGTGCAGGACTTGCTGCAAGGGACGTGGCTTTGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCCGCGTCTATGAGACGGGGTGGTGGTGGTGATAGTAGTGGTGGTGATGGCAACAGCGATGCTGGTGCTTCTAAGAGGCTAAGAACTTTGGGGTCATCAAAGAATGTTGCTGCTAGTGCTACCTCTCATAGTTCCACTTCCAATGCTACCCCAACAAAGAGCTTTGATACCAGTTCTTGTCAACAAGATGCTGGTTTCAAACAGTCTTTGCCACGGCACGTGCGTGCACCTGCGGTTTTTAGGTGCCATAGAGTGTCTGCTATTGGGAGTGGTGAAGATGAGATTGTTTACATGGCCACAGTTCATATTAGTGGCCATGTTTTTAAGGGGTTTCTGTATGATCATGGTGCTGATGCCAGAAATGATGTGCCTAGTGTCTCAGAACTGCAATTGGGAAACAATGGAAGTGGAAAGAATAATAATAGGGAATGCTCTTCTGCAATTGGGGTTCCAACTAGTGCTTACCCTGCTTCTGTTTGCTGA

>Glyma13g26730.2   sequence type=CDS   gene model=Glyma13g26730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGTTAGGCCTTAGAGACCTAGTTTTCATAGCTCCAACTCCTTCTCAACTTCACCACCATCAACAACACCAACCCATTTCAGCAGAACACCATTCAAACCTCCCTTTGCCTTCACAAGCCTCTCTCAGTGTTGGTCTTGGCATTTTCCCTCTCCTAACAGTGCCACACACCAATGATGTTCAAGTTCAGGTTCAAGACTGTGCCAACAACAACAACAACACCAACACCAACTATTGGAACCTGAAGATGTGTGGTGCCACTGAAGTGAATTCCACAAGAAAAGGTGTTATGAACATGGAGGATGAGGGAAGCAATAAGCAAATGATGGAGAGTGAGGAAGGTGGGGGTGAGTTTAGGGTGTGCCAGGATTGTGGCAATAGAGCCAAGAGAGATTGCAGCTTCAGAAGGTGCAGGACTTGCTGCAAGGGACGTGGCTTTGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCCGCGTCTATGAGACGGGGTGGTGGTGGTGATAGTAGTGGTGGTGATGGCAACAGCGATGCTGGTGCTTCTAAGAGGCTAAGAACTTTGGGGTCATCAAAGAATGTTGCTGCTAGTGCTACCTCTCATAGTTCCACTTCCAATGCTACCCCAACAAAGAGCTTTGATACCAGTTCTTGTCAACAAGATGCTGGTTTCAAACAGTCTTTGCCACGGCACGTGCGTGCACCTGCGGTTTTTAGGTGCCATAGAGTGTCTGCTATTGGGAGTGGTGAAGATGAGATTGTTTACATGGCCACAGTTCATATTAGTGGCCATGTTTTTAAGGGGTTTCTGTATGATCATGGTGCTGATGCCAGAAATGATGTGCCTAGTGTCTCAGAACTGCAATTGGGAAACAATGGAAGTGGAAAGAATAATAATAGGGAATGCTCTTCTGCAATTGGGGTTCCAACTAGTGCTTACCCTGCTTCTGTTTGCTGA

>Glyma13g26730.3   sequence type=CDS   gene model=Glyma13g26730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGTTAGGCCTTAGAGACCTAGTTTTCATAGCTCCAACTCCTTCTCAACTTCACCACCATCAACAACACCAACCCATTTCAGCAGAACACCATTCAAACCTCCCTTTGCCTTCACAAGCCTCTCTCAGTGTTGGTCTTGGCATTTTCCCTCTCCTAACAGTGCCACACACCAATGATGTTCAAGTTCAGGTTCAAGACTGTGCCAACAACAACAACAACACCAACACCAACTATTGGAACCTGAAGATGTGTGGTGCCACTGAAGTGAATTCCACAAGAAAAGGTGTTATGAACATGGAGGATGAGGGAAGCAATAAGCAAATGATGGAGAGTGAGGAAGGTGGGGGTGAGTTTAGGGTGTGCCAGGATTGTGGCAATAGAGCCAAGAGAGATTGCAGCTTCAGAAGGTGCAGGACTTGCTGCAAGGGACGTGGCTTTGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCCGCGTCTATGAGACGGGGTGGTGGTGGTGATAGTAGTGGTGGTGATGGCAACAGCGATGCTGGTGCTTCTAAGAGGCTAAGAACTTTGGGGTCATCAAAGAATGTTGCTGCTAGTGCTACCTCTCATAGTTCCACTTCCAATGCTACCCCAACAAAGAGCTTTGATACCAGTTCTTGTCAACAAGATGCTGGTTTCAAACAGTCTTTGCCACGGCACGTGCGTGCACCTGCGGTTTTTAGGTGCCATAGAGTGTCTGCTATTGGGAGTGGTGAAGATGAGATTGTTTACATGGCCACAGTTCATATTAGTGGCCATGTTTTTAAGGGGTTTCTGTATGATCATGGTGCTGATGCCAGAAATGATGTGCCTAGTGTCTCAGAACTGCAATTGGGAAACAATGGAAGTGGAAAGAATAATAATAGGGAATGCTCTTCTGCAATTGGGGTTCCAACTAGTGCTTACCCTGCTTCTGTTTGCTGA

Predicted protein sequences of Glyma13g26730

Limit To All Plant Sequences

>Glyma13g26730.1   sequence type=predicted peptide   gene model=Glyma13g26730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMLGLRDLVFIAPTPSQLHHHQQHQPISAEHHSNLPLPSQASLSVGLGIFPLLTVPHTNDVQVQVQDCANNNNNTNTNYWNLKMCGATEVNSTRKGVMNMEDEGSNKQMMESEEGGGEFRVCQDCGNRAKRDCSFRRCRTCCKGRGFDCSTHVKSTWVPASMRRGGGGDSSGGDGNSDAGASKRLRTLGSSKNVAASATSHSSTSNATPTKSFDTSSCQQDAGFKQSLPRHVRAPAVFRCHRVSAIGSGEDEIVYMATVHISGHVFKGFLYDHGADARNDVPSVSELQLGNNGSGKNNNRECSSAIGVPTSAYPASVC*

>Glyma13g26730.2   sequence type=predicted peptide   gene model=Glyma13g26730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMLGLRDLVFIAPTPSQLHHHQQHQPISAEHHSNLPLPSQASLSVGLGIFPLLTVPHTNDVQVQVQDCANNNNNTNTNYWNLKMCGATEVNSTRKGVMNMEDEGSNKQMMESEEGGGEFRVCQDCGNRAKRDCSFRRCRTCCKGRGFDCSTHVKSTWVPASMRRGGGGDSSGGDGNSDAGASKRLRTLGSSKNVAASATSHSSTSNATPTKSFDTSSCQQDAGFKQSLPRHVRAPAVFRCHRVSAIGSGEDEIVYMATVHISGHVFKGFLYDHGADARNDVPSVSELQLGNNGSGKNNNRECSSAIGVPTSAYPASVC*

>Glyma13g26730.3   sequence type=predicted peptide   gene model=Glyma13g26730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMLGLRDLVFIAPTPSQLHHHQQHQPISAEHHSNLPLPSQASLSVGLGIFPLLTVPHTNDVQVQVQDCANNNNNTNTNYWNLKMCGATEVNSTRKGVMNMEDEGSNKQMMESEEGGGEFRVCQDCGNRAKRDCSFRRCRTCCKGRGFDCSTHVKSTWVPASMRRGGGGDSSGGDGNSDAGASKRLRTLGSSKNVAASATSHSSTSNATPTKSFDTSSCQQDAGFKQSLPRHVRAPAVFRCHRVSAIGSGEDEIVYMATVHISGHVFKGFLYDHGADARNDVPSVSELQLGNNGSGKNNNRECSSAIGVPTSAYPASVC*

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