SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G55850 | AT | Annotation by Michelle Graham. TAIR10: Amidohydrolase family | chr3:20721866-20725489 REVERSE LENGTH=576 | SoyBase | E_val: 0 | ISS |
| GO:0007346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0048471 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: perinuclear region of cytoplasm | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| GO:0016810 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | SoyBase | N/A | ISS |
| PTHR22642 | Panther | IMIDAZOLONEPROPIONASE | JGI | ISS | |
| PF07969 | PFAM | Amidohydrolase family | JGI | ISS | |
| UniRef100_B9RGA4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Exoenzymes regulatory protein aepA, putative n=1 Tax=Ricinus communis RepID=B9RGA4_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_D7UBN5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=D7UBN5_VITVI | SoyBase | E_val: 0 | ISS |
|
Glyma13g26721 not represented in the dataset |
Glyma13g26721 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g197200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g26721.1 sequence type=CDS gene model=Glyma13g26721 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACTTTGTTGTTCTCCTTCACATATTTGTCTTTGCTCCAATCCTTTTCTGCATCACTTTTCTGTCTCTGCCTCTTCCCAGCCCAACATATTTTTTGGCTTGGAAGTCACAGTTGTCTCAGCCAGTGGCTGATTTGGTTTTGAGGAATGGGGTGATATATACCAGTGATGATTCTCTCCCATTTGCAGATTCCATGGCAGTGGCCAATGGGAGGGTTCTTTGTGTCGGAAACCGTTCATTTGTCCAGGAATTCGAAGGATATGGAACTCAAGTTTTGGATCTTGGTGGGAAGGTTGTGGTTCCTGGGTTCATTGATTCCCATGTGCATTTCATTGATGGTGGATTGCAGATGATGCAGGTGAAGCTGAGAGGTGTTAATAAAAAGGAAGAATTTATCAGAAGGATCAAAGATGCAGCACAAAGCACAAAACAAGGTTCCTGGATTTTGGGTGGTGGATGGAACAATGATCTATGGGGAGGAGATCTTCCAGCTGCCTCTTGGATCAATGATGTTACTCCTAATAATCCTGTTTGGCTGTCAAGAGTGGACGGCCACATGGGCTTGGCTAACTCAGTGGCACTTACGTTGGCTGGGATTACAAATTTAACAGATGATCCAAGAGGGGGAACTATATTGAGGACTGCCAATGGAGAACCTACTGGAGTATTAATTGATTCAGCGAGGACACTTGTTACGTCCCAGATTCCAGAGGATTCAGTAGATGATAGAAGGGAGGCATTGCATAGAGCAAGCAATCTTGCCCTAACAAGGGGGGTGACAACGGTTGTTGATATGGGAAGATATTATCCTGGGTTTTCAACCGAACTTTCTTGGGATGATTTTTCAGATGTTTATCAATGGGCTAATTCTATGTCAAAAATGAAAATTAGAGTGTGTTTATTCTTTTCAATGGAGACATGGTCACGTTTGGTGGGTGTGATTAACAGAGTCGGACATGCCTTGAGCGAATGGATTTATATAGGTGGTGTCAAAGCTTTCGCTGATGGGTCTTTAGGTTCTAATAGTGCGTTGCTTTATGAGCCATATGTTGATGATCCTGACAATTATGGTCTACAAGTGACTGAGCTTGAAGCTCTTCTCAACATGACCACAGAGTCAGATTTAAATGGTCTACAGGTTGCTATTCATGCTATAGGGGACAAAGCAAATGACCTTATCTTGGACATGTATGGTTTAGTAGCTTCTACAAATGGAATGAGAGACCGACGATTCAGGATTGAGCATGCCCAGCAGTTGGCAGCTGGAACCCCAGGTCGATTTGGAAAACAACGGGTTGTTGCTTCCATGCAGCCGGATCAATTGTTGGATGATGCAGACTCTACTAGCAAAAAGCTTGGCAAGGATAGGGCTGAAAAGGAATCATATTTGTTTCGGTCACTCTTAAATAACAATGCATTAGTGGCATTTGGTTCTGACTGGCCAGTGGTAGATATCAATCCCTTAAGTGGTATTAAGACAGCAATGAAAAGGAGGCCCCCCAACTGGCAAAGTGCATGGATTCCATCTGAATGCATTTCATTAGATGATGCTATAAAAGCTTACACCATTTCTGCTGCTCGTGCAAGCTTCCTTGACAAAGATCTTGGATCCTTATCTCCAGGGAAACTGGCAGATTTTGTCATATTGTCCACTGATTCATGGAAAGACTTTGCTGAAGATGCATCTGCAAATGTTGAGGAAACATATGTTTCTGGTGTGAGAGCATATCCTTGA
>Glyma13g26721.1 sequence type=predicted peptide gene model=Glyma13g26721 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDFVVLLHIFVFAPILFCITFLSLPLPSPTYFLAWKSQLSQPVADLVLRNGVIYTSDDSLPFADSMAVANGRVLCVGNRSFVQEFEGYGTQVLDLGGKVVVPGFIDSHVHFIDGGLQMMQVKLRGVNKKEEFIRRIKDAAQSTKQGSWILGGGWNNDLWGGDLPAASWINDVTPNNPVWLSRVDGHMGLANSVALTLAGITNLTDDPRGGTILRTANGEPTGVLIDSARTLVTSQIPEDSVDDRREALHRASNLALTRGVTTVVDMGRYYPGFSTELSWDDFSDVYQWANSMSKMKIRVCLFFSMETWSRLVGVINRVGHALSEWIYIGGVKAFADGSLGSNSALLYEPYVDDPDNYGLQVTELEALLNMTTESDLNGLQVAIHAIGDKANDLILDMYGLVASTNGMRDRRFRIEHAQQLAAGTPGRFGKQRVVASMQPDQLLDDADSTSKKLGKDRAEKESYLFRSLLNNNALVAFGSDWPVVDINPLSGIKTAMKRRPPNWQSAWIPSECISLDDAIKAYTISAARASFLDKDLGSLSPGKLADFVILSTDSWKDFAEDASANVEETYVSGVRAYP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
