Glyma13g26700 - SoyBase

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Report for Sequence Feature Glyma13g26700

Feature Type:	gene_model
Chromosome:	Gm13
Start:	29892776
stop:	29902554
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g26700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54440	AT	Annotation by Michelle Graham. TAIR10: glycoside hydrolase family 2 protein \| chr3:20148494-20157019 REVERSE LENGTH=1107	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009341	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: beta-galactosidase complex	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0004565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-galactosidase activity	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
KOG2024	KOG	Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2)	JGI		ISS
PTHR10066	Panther	GLYCOSIDE HYDROLASE	JGI		ISS
PTHR10066:SF41	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00703	PFAM	domain	JGI		ISS
PF02836	PFAM	Glycosyl hydrolases family 2, TIM barrel domain	JGI		ISS
PF02837	PFAM	Glycosyl hydrolases family 2, sugar binding domain	JGI		ISS
PF02929	PFAM	Beta galactosidase small chain	JGI		ISS
UniRef100_G7LG20	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta Galactosidase-like protein n=1 Tax=Medicago truncatula RepID=G7LG20_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BC24	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BC24 related cluster n=1 Tax=unknown RepID=UPI000233BC24	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g26700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g26700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g197000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g26700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g26700

Limit To All Plant Sequences

>Glyma13g26700.1   sequence type=CDS   gene model=Glyma13g26700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCTTCTTCTTCTTTGGTTGTTGTTGGCTCTCTCCATCTTACTTCACAGAATGGTTACAAAGTGTGGGAAGATCCTTCTTTCATCAAGTGGAGGAAAAGGGACCCTCATGTTACCTTGCATTGCCATGAATCTCTTGAAGGATCTCTTAAATATTGGTATCAACGCAATAAAGTGGATTTTTTGGCTTCCCAGTCAGCTGTTTGGAATGATGATGCTGTTCAGGGGTCTCTTGACTGTGCTGCATTTTGGGTCAAAGATTTGCCTTTTGTCAAGTCCTTGTCTGGATATTGGAAATTTTTCATTGCTGACAGTCCCAACAATGTCCCTACTTATTTTTATGAAAGTGAGTTCCAGGATTCAGGGTGGAAAACTTTGCCAGTTCCTTCGAATTGGCAGTTACATGGATTTGACACTCCTATATATACGAACGTGGTGTATCCATTTCCACTAGATCCTCCTTTCATTCCTGTGGAAAATCCTACTGGCTGTTACAGAACGTACTTCCACATTCCTAAAGAATGGGAGGGTAGAAGAGTTTTGTTGCATTTTGAAGCAGTTGATTCTGCCTTTTGTGCATGGATAAATGGGCATCCTGTTGGATATAGCCAAGACAGCAGACTACCTGCAGAGTTTGAAATTACCGATTTTTGCCATCCCTGTGGTTCAGACCTTAAGAATGTTTTAGCCGTTCAAGTGTTTAGATGGTGTGATGGTTCTTACCTTGAAGACCAGGACCAATGGAGGTTATCTGGTATCCACCGTGATGTTCTTCTTATGGCAAAGCCGGAGGTATTTATTACTGACTACTTTTTCAAATCAAACCTTGCCGAAGATTTTTCTTGCGCAGAGATAATGGTTGAAGTAAAAATAGATAGATTACAAGAGACATCCAAGGATAATGTTCTCACAAACTACTCTATAGAAGCTACATTGTTTGATTCTGGAAGCTGGTACACCTCTGACGGGAATCCTGATCTCCTTTCATCTAACGTGGCAGACATAAAGCTCCAATCATCAAGTGCACCAGCACAACCATTAGGGTTTCATGGCTATGTTCTTACAGGGAAACTGAAATCGCCAAAGCTTTGGTCCGCAGAAAAACCATACCTCTATACCCTAGTTGTTGTCCTGAAAGATAGATCTGGCCGCATTGTTGACTGTGAATCATGTCCAGTAGGGTTTAGAAAAGTATCTAAAGCCCACAAACAACTGCTTGTTAATGGACATGCAGTTGTAATAAGAGGTGTGAACAGGCATGAACATCATCCACAAGTGGGGAAGGCAAACATAGAATCCTGCATGATCAAGGATTTGGTCTTAATGAAGCAAAACAATATTAATGCTGTGAGGAACAGCCATTATCCCCAACATCCACGTTGGTATGAGCTATGTGATTTGTTTGGCATGTACATGATAGATGAAGCCAATATTGAGACACATCATTTTGACTATTCTAAACATCTCAAGCATCCCACTATGGAACCAAAGTGGGCAACTTCAATGCTGGATCGTGTGATCGGCATGGTTGAGAGAGATAAAAATCACACATGTATTATCTCCTGGTCTTTAGGGAATGAATCTGGATTTGGAACAAATCATTTTGCTTTAGCTGGTTGGATTCGGGGAAGAGATTCATCTCGGGTATTGCATTATGAAGGAGGTGGATCCAGGACTCCGTGCACTGATATTGTGTGTCCTATGTATATGCGTGTTTGGGACATGGTGAAAATAGCCAATGATCCAACTGAAACACGTCCTCTGATACTGTGCGAGTATTCACATGCAATGGGAAACAGTAATGGGAATCTACATATATATTGGGAAGCAATTGACAACACTTTTGGACTCCAAGGAGGCTTTATTTGGGATTGGGTTGATCAAGCCTTGGTGAAAGTTTATGAAGATGGTACCAAGCATTGGGCATATGGAGGTGAATTTGGGGATGTTCCCAATGACTTGAATTTCTGTTTGAATGGCCTCACATTTCCTGATCGAACTCCTCATCCTGTTTTACATGAGGTTAAGTACTTATACCAACCAATCAAGGTGGCTTTAAAGGAAGGAAAATTGGAGATAAAAAATACTCATTTTTTTCAAACAACAGAAGGATTGGAGTTCAGCTGGTCTATTTCTGCAGATGGATACAACCTTGGATCTGGTCTTTTGGGCCTTGTCCCTATAAAGCCCCAGAGTAGTCATGCTGTTGATTGGCAATCAGGTCCATGGTATTCCCTATGGGCTTCAACAGATGAAGAAGAACTATTCCTGACTATAACAGCTAAACTTTTGAACTCCACACGCTGGGTTGAAGCTGGTCATATTGTTTCATCTGCTCAAGTTCAATTGCCTACCAGGAGAAACATTGCACCTCATGTTATTGATATTAATGGTGGCACTCTGGTTGCTGAAACACTAGGAGATACAATCGTAGTCAAACAGCAAGATGCTTGGGATTTGACTTTGAATACTAAAACAGGTTTAGTTGAAAGCTGGAAGGTTAAAGGAGTGCATGTTATGAAAAAGGGCATCCTCCCATGTTTCTGGCGAGCTCCTATCGATAATGACAAAGGAGGAGGTTCAGCCAGTTATTTGTCCAGGTGGAAAGCAGCTGGAATGGACTGCCTCCACTTTATTACTGAGAGCTGTTCTGTGCAAAATATTACGGAGAACTCAGTTAGAATATTGGTGGTTTTTCTTGGTGTTACCAAGGGCGAGGATGGTTCTCTCTCCAACCAAGACAAGTCAAAGGTTTTATTTACAACAGAAATGGCATATACAATTTATGCTTCTGGGGATGTCATTATAGAATGCAATGTGAAACCAAACCCTGATCTTCCTCCTTTGCCACGTGTGGGAATCGAGTTAAATGTGGAAAAGTCTTTGGATCAAGTAACTTGGTATGGAAGAGGACCATTTGAGTGTTATCCAGATAGAAAAGCTGCAGCCCTGGTTGCAGTCTATGAACATAATGTTAGTGAGTTGCATGTTCCTTATATTGTTCCGGGGGAATCTTCAGGTAGGGCAGATGTTAGATGGGCAACATTCAGAAACAAAGATGCTTTTGGAATATATGCTTCTAAGTATGGTAGCTCTCCACCCATGCAAATGAGTGCAAGTTACTACAGCACCTCGGAACTTGACCGTGCGACACACAATGAAGAGCTCATTGAAGGAGATAGCATTGAGATTCATCTAGATCACAAGCACATGGGATTGGGTGGAGATGATAGTTGGTCGCCATGTGTCCACGAACAGTATTTGATTCCTCCTGTGCCATACTCATTCTCTGTTAGGCTGTGCCCAGTAAATCCAGCCACTTCTGGTCATGACATCTACAAATCCCAGTTTCAAAACTCTTGA

Predicted protein sequences of Glyma13g26700

Limit To All Plant Sequences

>Glyma13g26700.1   sequence type=predicted peptide   gene model=Glyma13g26700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMASSSLVVVGSLHLTSQNGYKVWEDPSFIKWRKRDPHVTLHCHESLEGSLKYWYQRNKVDFLASQSAVWNDDAVQGSLDCAAFWVKDLPFVKSLSGYWKFFIADSPNNVPTYFYESEFQDSGWKTLPVPSNWQLHGFDTPIYTNVVYPFPLDPPFIPVENPTGCYRTYFHIPKEWEGRRVLLHFEAVDSAFCAWINGHPVGYSQDSRLPAEFEITDFCHPCGSDLKNVLAVQVFRWCDGSYLEDQDQWRLSGIHRDVLLMAKPEVFITDYFFKSNLAEDFSCAEIMVEVKIDRLQETSKDNVLTNYSIEATLFDSGSWYTSDGNPDLLSSNVADIKLQSSSAPAQPLGFHGYVLTGKLKSPKLWSAEKPYLYTLVVVLKDRSGRIVDCESCPVGFRKVSKAHKQLLVNGHAVVIRGVNRHEHHPQVGKANIESCMIKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGMYMIDEANIETHHFDYSKHLKHPTMEPKWATSMLDRVIGMVERDKNHTCIISWSLGNESGFGTNHFALAGWIRGRDSSRVLHYEGGGSRTPCTDIVCPMYMRVWDMVKIANDPTETRPLILCEYSHAMGNSNGNLHIYWEAIDNTFGLQGGFIWDWVDQALVKVYEDGTKHWAYGGEFGDVPNDLNFCLNGLTFPDRTPHPVLHEVKYLYQPIKVALKEGKLEIKNTHFFQTTEGLEFSWSISADGYNLGSGLLGLVPIKPQSSHAVDWQSGPWYSLWASTDEEELFLTITAKLLNSTRWVEAGHIVSSAQVQLPTRRNIAPHVIDINGGTLVAETLGDTIVVKQQDAWDLTLNTKTGLVESWKVKGVHVMKKGILPCFWRAPIDNDKGGGSASYLSRWKAAGMDCLHFITESCSVQNITENSVRILVVFLGVTKGEDGSLSNQDKSKVLFTTEMAYTIYASGDVIIECNVKPNPDLPPLPRVGIELNVEKSLDQVTWYGRGPFECYPDRKAAALVAVYEHNVSELHVPYIVPGESSGRADVRWATFRNKDAFGIYASKYGSSPPMQMSASYYSTSELDRATHNEELIEGDSIEIHLDHKHMGLGGDDSWSPCVHEQYLIPPVPYSFSVRLCPVNPATSGHDIYKSQFQNS*

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