SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07960 | AT | Annotation by Michelle Graham. TAIR10: Phosphatidylinositol-4-phosphate 5-kinase family protein | chr3:2535274-2538090 FORWARD LENGTH=715 | SoyBase | E_val: 0 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0009827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0030048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament-based movement | SoyBase | N/A | ISS |
| GO:0046488 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol metabolic process | SoyBase | N/A | ISS |
| GO:0048610 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular process involved in reproduction | SoyBase | N/A | ISS |
| GO:0048868 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube development | SoyBase | N/A | ISS |
| GO:0072583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: clathrin-mediated endocytosis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016324 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apical plasma membrane | SoyBase | N/A | ISS |
| GO:0090406 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: pollen tube | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016307 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol phosphate kinase activity | SoyBase | N/A | ISS |
| GO:0016308 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1-phosphatidylinositol-4-phosphate 5-kinase activity | SoyBase | N/A | ISS |
| KOG0229 | KOG | Phosphatidylinositol-4-phosphate 5-kinase | JGI | ISS | |
| PTHR23086 | Panther | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE | JGI | ISS | |
| PTHR23086:SF6 | Panther | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE | JGI | ISS | |
| PF01504 | PFAM | Phosphatidylinositol-4-phosphate 5-Kinase | JGI | ISS | |
| PF02493 | PFAM | MORN repeat | JGI | ISS | |
| UniRef100_G7LG15 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=Medicago truncatula RepID=G7LG15_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BC22 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BC22 related cluster n=1 Tax=unknown RepID=UPI000233BC22 | SoyBase | E_val: 0 | ISS |
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Glyma13g26670 not represented in the dataset |
Glyma13g26670 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g37550 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g196700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g26670.1 sequence type=CDS gene model=Glyma13g26670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAAAGAGCTTACAAGCTTTGTGAAGGCTTGGGAAGCAGCAGTTAGGAAATCAGCAGGTCCAAAGAGGAGGGCTAACAGCATCTTCACACCAATGTCTGTTGCCCATGTTGATGATGATGATGATGCAACAAGAAATGTTGTTGGTGAGGTTGAGAAGATTCTCCCCAATGGTGACTTCTACACAGGCCAGTGGCTTGACAACAATGGCCCTCATGGCCAGGGAAAGTATCTGTGGACAGATGGGTGCATGTATGTTGGTGAATGGCAAAAGGGTGGCATCATGGGGAAAGGGAGGTTCAGTTGGCCTAGTGGTGCAACCTACGAGGGTGATTTCAAGGGTGGTTATATGGATGGAAAAGGGACTTTCATAGGGTCTTCTGGGGACACCTACAAGGGTTGTTGGGTGATGGAGTTGAGACATGGCCAGGGGACTCAGAGTTACCCCAATGGGGATTTCTATGATGGGGAGTGGAGGAAAGGGTTGCAGAATGGACATGGAAGGTACCAATGGAAGAATGGGAACCATTACATTGGACAATGGAGGAATGGCTTGTTCCATGGGAATGGCACCATGATGTGGAGCAATGGGAATAGGTATGATGGTTGTTGGGAGGAAGGGTTGCCTAAGGGGAATGGAACATTCAGGTGGGGTGGTGATGGGAGTTTCTATGTTGGGGTTTGGAGTAAGGATCCAAAGGAGCAAAATGGGACTTATTACCCTTCTGGCTCTTGTGCTGGCCATTTGGAATGGGATCCTCAGGAGCTGTTCTCTTTGGACTTGGTGGAGTGCAGTGTTTGTGGCCTTGAGAAGGTGGCAATTTACCCTTCACACAAGAGTTTGAACATGTTGGAGGGTGATAATAAGATGTGTAAGAAGGGGACTGATGGGACTGGGAGGACAAGGAGGATGTCAGTGGATGCAAGAATTAGTAATTACAGCTCTGAAGATGGTTCTTATTCATCCTATAATGGCTCAAGGAGTTCTCAGGTGGATAATTCTATTCCAAGAGTGCCACATTTGAGGTTGAAGGCTCCAAAGAGACAGGGAGAGACTATTTCTCAAGGGCATAAGAACTATGAGCTCATGCTTAATCTGCAGCTTGGTATCAGACATGCTGTTGGAAGACCTGCTCCAAGTACATCTCTTGATTTGAAGTCTTCTGCATTTGATCCTAAAGAAAAAGTGTGGACTAAATTTCCCCCAGAAGGATCTAAGCACACGCCACCTCACCAATCTTGTGAGTTTAGATGGAAAGACTACTGCCCCGTAGTGTTCAGGGCTCTCAGAAAATTGTTCAAAGTAGATCCTGCTGATTACATGCTATCATTATGTGGGAATGATGCCCTTCGGGAACTCTCTTCCCCTGGAAAAAGTGGAAGCTTCTTTTATTTGACCAATGATGACCGGTACATGATAAAGACCATGAAGAAATCAGAAGTAAAAGTTTTCTTGAGAATGCTACCTGGTTACTACAAACATGTTCGGGCTTTTGAGAACACTCTAGTCACCAAGTTCTTTGGCCTCCACTGTGTTAAGCTAACAGGAACTGCACAGAAGAAGGTTCGATTTGTTATCATGGGAAATCTATTCTGCTCACAATATCCCATCCATAGGCGCTTTGACTTAAAAGGTTCGACCTTCGGTCGCACAACTGACAAACCCGAGTCAGAAATAGAGCCTACAACAACACTCAAGGACCTTGATCTAAATTATATATTTCGGTTGCGGAAGTCTTGGTTTCAAGAATTCTGCAGGCAAGTGGACAGAGACTGTGACTTTCTGGAACACGAGAGGATCATGGATTACAGTATGTTGGTAGGTCTTCATTTTCGAGGAATGTCGTGCGGTGACAATGTTACTCCTTCTGGTCACAGTCCAGGTCCACAAACTCCAACTGGCCATGGTAACTTTGATGATGGAGCCCCTCGTCTTTCTGGAGTCGATGTGGATCATCTTGTAGTAGATCCGAATCGGTGGATTCAATTGGGTATAAGCATGCCAGCACGGGCCGAAATGACCGTGCGAAAAAGTTGTGACACTCCTCAGCTGGTTGGAGAACCAACAGGGGAGTTATACGAGATTATCATCTTTTTCGGGATCATCGACATATTACAAGACTATGACATTAGCAAAAAGCTTGAGCATGCTTACAAATCATTCCAATATGATCCAACATCAATCTCTGCTGTTGATCCAAGGCTATATTCAAAACGGTTTCGCGATTTCATCTTCAGAGTTTTTGTAGAGGACTAA
>Glyma13g26670.1 sequence type=predicted peptide gene model=Glyma13g26670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNKELTSFVKAWEAAVRKSAGPKRRANSIFTPMSVAHVDDDDDATRNVVGEVEKILPNGDFYTGQWLDNNGPHGQGKYLWTDGCMYVGEWQKGGIMGKGRFSWPSGATYEGDFKGGYMDGKGTFIGSSGDTYKGCWVMELRHGQGTQSYPNGDFYDGEWRKGLQNGHGRYQWKNGNHYIGQWRNGLFHGNGTMMWSNGNRYDGCWEEGLPKGNGTFRWGGDGSFYVGVWSKDPKEQNGTYYPSGSCAGHLEWDPQELFSLDLVECSVCGLEKVAIYPSHKSLNMLEGDNKMCKKGTDGTGRTRRMSVDARISNYSSEDGSYSSYNGSRSSQVDNSIPRVPHLRLKAPKRQGETISQGHKNYELMLNLQLGIRHAVGRPAPSTSLDLKSSAFDPKEKVWTKFPPEGSKHTPPHQSCEFRWKDYCPVVFRALRKLFKVDPADYMLSLCGNDALRELSSPGKSGSFFYLTNDDRYMIKTMKKSEVKVFLRMLPGYYKHVRAFENTLVTKFFGLHCVKLTGTAQKKVRFVIMGNLFCSQYPIHRRFDLKGSTFGRTTDKPESEIEPTTTLKDLDLNYIFRLRKSWFQEFCRQVDRDCDFLEHERIMDYSMLVGLHFRGMSCGDNVTPSGHSPGPQTPTGHGNFDDGAPRLSGVDVDHLVVDPNRWIQLGISMPARAEMTVRKSCDTPQLVGEPTGELYEIIIFFGIIDILQDYDISKKLEHAYKSFQYDPTSISAVDPRLYSKRFRDFIFRVFVED*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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