Glyma13g26340 - SoyBase

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Report for Sequence Feature Glyma13g26340

Feature Type:	gene_model
Chromosome:	Gm13
Start:	29542357
stop:	29550215
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g26340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF08027	PFAM	Albumin I	JGI		ISS
UniRef100_G3FGW7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leginsulin 1 n=1 Tax=Glycine max RepID=G3FGW7_SOYBN	SoyBase	E_val: 3.00E-97	ISS
UniRef100_I1M0P6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M0P6_SOYBN	SoyBase	E_val: 9.00E-106	ISS

Expression Patterns of Glyma13g26340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g26340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g194400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g26340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g26340

Limit To All Plant Sequences

>Glyma13g26340.2   sequence type=transcript   gene model=Glyma13g26340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCAAAACTCACAACACATCTAAACAAAAAATCAAGAACAATGGCTTATGCTAGGCTTGCTCCTTTTGCTGTCTTCTTGCTTGCCACTTCCATAATGTTCCCAACGAAGATAGAAGCAGCAGATTGTAATGGTGCATGTTCACCTTTCGAGATGCCACCGTGCCGCTCACGTGATTGTCGTTGTGTCCCTATAGGACTAGTTGCTGGTTTCTGCATACATCCAACTGGACTTTCATCTGTTGCGAAGATGATCGACGAACATCCCAACTTATGTCAATCTGATGATGAATGCATGAAGAAAGGAAGTGGCAATTTTTGCGCTCGTTACCCTAATAATTATATCGATTATGGATGGTGTTTTGATTCTGATTCTGAAGCACTGAAAGGCTTCTTGGCCATGCCTAGGGCAACCACCAAGTAATATGGTGGGTATGCCAAAGTGGGCATGCTTGATGCATCTTCTACTACTTAAAAATAAAAGCTTATGATGCATCTACTGCTTTAAACAAAAGAGTGCTCCACTACGCAACTTTTGTTTCCAACTTATAGTTGGTTACGTTTTATGTAAACTCAACCCATGTATGTTTTGGAGCATTCCAGTTAATAAAAAATGTTTCTATACATATGTCTGTTGTTTAAAAAAATTATTAAGAAAAGAGTAAGACA

Coding sequences of Glyma13g26340

Limit To All Plant Sequences

>Glyma13g26340.1   sequence type=CDS   gene model=Glyma13g26340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGAAGGAACAGGCAGTGCAAAACTCACAACACATCTAAACAAAAAATCAAGAACAATGGCTTATGCTAGGCTTGCTCCTATGGCTGTCTTCTTGCTTGCCACTTCCACCATAATGTTCCCAACGAAGATAGAAGCAGCAGATTGTAATGGTGCATGTTCACCTTTCGAGATGCCACCGTGCCGCTCACGTGATTGTCGTTGTGTCCCTATAGGACTAGTTGCTGGTTTCTGCATACATCCAACTGGACTTTCATCTGTTGCGAAGATGATCGACGAACATCCCAACTTATGTCAATCTGATGATGAATGCATGAAGAAAGGAAGTGGCAATTTTTGCGCTCGTTACCCTAATAATTATATCGATTATGGATGGTGTTTTGATTCTGATTCTGAAGCACTGAAAGGCTTCTTGGCCATGCCTAGGGCAACCACCAAGTAA

>Glyma13g26340.2   sequence type=CDS   gene model=Glyma13g26340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTATGCTAGGCTTGCTCCTTTTGCTGTCTTCTTGCTTGCCACTTCCATAATGTTCCCAACGAAGATAGAAGCAGCAGATTGTAATGGTGCATGTTCACCTTTCGAGATGCCACCGTGCCGCTCACGTGATTGTCGTTGTGTCCCTATAGGACTAGTTGCTGGTTTCTGCATACATCCAACTGGACTTTCATCTGTTGCGAAGATGATCGACGAACATCCCAACTTATGTCAATCTGATGATGAATGCATGAAGAAAGGAAGTGGCAATTTTTGCGCTCGTTACCCTAATAATTATATCGATTATGGATGGTGTTTTGATTCTGATTCTGAAGCACTGAAAGGCTTCTTGGCCATGCCTAGGGCAACCACCAAGTAA

Predicted protein sequences of Glyma13g26340

Limit To All Plant Sequences

>Glyma13g26340.1   sequence type=predicted peptide   gene model=Glyma13g26340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQEGTGSAKLTTHLNKKSRTMAYARLAPMAVFLLATSTIMFPTKIEAADCNGACSPFEMPPCRSRDCRCVPIGLVAGFCIHPTGLSSVAKMIDEHPNLCQSDDECMKKGSGNFCARYPNNYIDYGWCFDSDSEALKGFLAMPRATTK*

>Glyma13g26340.2   sequence type=predicted peptide   gene model=Glyma13g26340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYARLAPFAVFLLATSIMFPTKIEAADCNGACSPFEMPPCRSRDCRCVPIGLVAGFCIHPTGLSSVAKMIDEHPNLCQSDDECMKKGSGNFCARYPNNYIDYGWCFDSDSEALKGFLAMPRATTK*

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