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Report for Sequence Feature Glyma13g26270

Feature Type:gene_model
Chromosome:Gm13
Start:29477026
stop:29479751
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12260AT Annotation by Michelle Graham. TAIR10: LYR family of Fe/S cluster biogenesis protein | chr3:3909252-3910337 REVERSE LENGTH=133 SoyBaseE_val: 3.00E-61ISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0009060GO-bp Annotation by Michelle Graham. GO Biological Process: aerobic respiration SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005747GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
KOG3426 KOG NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit JGI ISS
PTHR12964Panther NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT JGI ISS
UniRef100_B7FMX5UniRef Annotation by Michelle Graham. Most informative UniRef hit: NADH dehydrogenase n=1 Tax=Medicago truncatula RepID=B7FMX5_MEDTR SoyBaseE_val: 9.00E-63ISS
UniRef100_I1M0N9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0N9_SOYBN SoyBaseE_val: 3.00E-92ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g26270 not represented in the dataset

Glyma13g26270 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma09g11970 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Glyma15g37200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g193600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g26270.1   sequence type=CDS   gene model=Glyma13g26270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAACGCGGCGCTTCGGAACGTGAAGGTGCTCCCGAACTCGGCGAATATGGAGGAAGCGCGTCACCGAGTCTTCGAATTCTTCAGAACGGCCTGCAGATCGCTACCTTCCGTTATGGAAATCTACAACCTCTACGACGTCGTTTCCGTCTCCGAACTCCGCTCCTCCGTCGCCTCCCAGATCCGCAACAACATCCACGTCACCGATCCCAAAGTGATCGATATGCTGCTTTTCAAGGGGATGGAAGAGCTGAAGAATGTTGTGGACCATTCAAAGCAGAGGCATCATATTATTGGTCAGTACGTAGTTGGTCGGCAAGTGCAGGATTCAGCCACAAAAGACCCGGACACCTCTACTTTTCTGAAGAATTTCTACAACACCAATTACTTCTGA

>Glyma13g26270.1   sequence type=predicted peptide   gene model=Glyma13g26270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANAALRNVKVLPNSANMEEARHRVFEFFRTACRSLPSVMEIYNLYDVVSVSELRSSVASQIRNNIHVTDPKVIDMLLFKGMEELKNVVDHSKQRHHIIGQYVVGRQVQDSATKDPDTSTFLKNFYNTNYF*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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