Glyma13g26220 - SoyBase

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Report for Sequence Feature Glyma13g26220

Feature Type:	gene_model
Chromosome:	Gm13
Start:	29422320
stop:	29439100
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g26220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06970	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF810) \| chr5:2158431-2166004 REVERSE LENGTH=1101	SoyBase	E_val: 0	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05664	PFAM	Protein of unknown function (DUF810)	JGI		ISS
UniRef100_I1M0N4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0N4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8RX56	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g06970/MOJ9_14 n=1 Tax=Arabidopsis thaliana RepID=Q8RX56_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g26220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g26220

Paralog	Evidence	Comments
Glyma15g36920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g26220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g192900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g26220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g26220

Limit To All Plant Sequences

>Glyma13g26220.1   sequence type=CDS   gene model=Glyma13g26220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAGAATGCCATAGAGCTTCTCCAGAGATACAGGAGGGACAGAAGAGTGCTTCTTGATTTTATACTTTCAGGGAGCTTAATCAAGAAAGTTGTAATGCCACCTGGTGCAGTTACACTGGATGATGTGGATCTAGATCAAGTCAGTGTTGATTATGTCCTCAACTGTGCCAAAAAGAGTACATTGCTTGAACTTTCAGAAGCAATTAGAGATTATCATGATCATACTGGGTTACCCCAAATGAGTGATACAGGTTCAGTTGGTGAGTTTTATTTGGTCACTGATCCTGGGTCTTCAGGTTCTCCTCCCAGGAGGCCACCACCAACTGTTCCAACTGCAGTGCCTCCTGTCGCTGTTTCCACTCCTCCTGTTTTTCCACCATCCCCAATTGTTTCTAATGTATCGAGATCGGAGTCTTTTGACTCTACTCAAGAAAAGGAGCTAACTGTGGATGATATTGAAGACTTTGAGGATGATGATGATGTTGCGGTGGTTGAAGGTTTCAGAGCTAAAAGGACTCTTAATGATGCTTCTGATCTTGCAGTGAAATTGCCTTCTTTCTCCACAGGCATCTCAGATGATGATCTTCGTGAAACTGCATATGAGATCCTCTTGGCTTGTGCTGGAGCCACAGGGGGTCTGATTGTCCCATCAAAAGAAAAAAAGAAAGATAAAAAATCCAGCTTGATTAGGAAGCTTGGGCGCAGCAAAAGTGGAAGTGTTGTATCCCAGTCCCAGAATGCTCCTGGATTAGTTGGCTTGTTGGAAACCATGCGTGTTCAGATGGAGATATCCGAGTCAATGGATATTAGAACAAGACAAGGCTTGCTAAATGCTCTGGTGGGAAAGGTGGGGAAAAGGATGGATACTCTATTGATTCCTTTGGAGTTGCTTTGCTGTATTTCACGTTCAGAATTTTCTGATAAGAAGGCTTTTATACGTTGGCAAAAGAGGCAGTTAAAAGTTTTAGAGGAGGGGCTTGTTAATCACCCTGCCGTTGGATTTGGTGAATCTGGACGCAAGACAAATGAGTTGAGGATTCTGTTGGCCAAGATTGAAGAAGCAGAGTTTCTCCCATCTTCAACTGGTGAACTTCAAAGGACAGAATGCTTGAGATCCCTAAGGGAGATTGCCATTCCACTTGCTGAGAGGCCAGCTCGGGGTGACTTAACTGGTGAAATATGCCATTGGGCAGATGGTTACCACTTAAATGTCAGACTATATGAGAAATTACTTTTAAGTGTATTTGACATGCTAGATGAAGGAAAGCTGACAGAGGAAGTGGAAGAAATTCTTGAACTTTTGAAGTCGACTTGGAGAGTTTTAGGAATCACGGAGACAATCCATCAAACCTGCTATGCATGGGTTTTATTTCGTCAGTATGTTATCACAAGGGAGCATGGGGTTTTGCTGCATGCTCTTGAGCAATTAAATAAAATACCACTGATGGAGCAAAGAGGCCAACAAGAGAGGTTGCACTTGAAAAGCTTGCATTCTAAGGTTGAAGGCGAACGAGATATGTCTTTCTTACAGTCTTTCTTAACACCAATTCAGAGATGGACTGACAAGCAGCTTGGAGATTACCATCTGCATTTCAATGAGGGTTCAGCAACTATGGAAAAGATTGTAGCAGTTGCAATGATTACCAGGAGGCTTCTACTGGAAGAACCAGAAACTAGCACACAGTCCTTGCCAATTAGTGATCGTGATCAGATAGAGATATATATATCATCATCAATTAAGAATGCATTTTCAAGGACAGTGCAAGTTGTTGACAGAGTAGATATGTCACATGAGCATCCCTTGGCATTGCTTGCAGAAGAACTCAAGAAGTTCCTAAAAAAGGAATCAGCATCTTTCTTGCCTATTTTATCTCAGAGGCATCCTCAAGCAACTGTTGTATCTGCATCATTAGTTCACAAACTTTATGGCCACAGACTGAAACCCTTTTTGGATAGTGCAGAACATTTAAGTGAGGATGTCATTTCTGTATTTCCTGCAGCTGAAAGTCTAGAGCAGTTCATAATGGCACTTATTACATCTGTATGCCATGAAGAAAATGCTGAGATCCTGTTGAAGAAATTAAATCTCTACCAGATTGAGATGAAATCTGGAACATTGGTGTTGCGTTGGGTCAATTCACAGCTTGGAAGAATTTTAGGTTGGGTAGAGCGGGTTATTCAGCAAGAGCATTGGGACCCGATATCTCCTCAACAACGACATGCTGGTTCTATTGTGGAAGTTTACAGGATTGTTGAGGAGACGGTTGATCAATTTTTTGGTCTTAAAGTTCCAATGAGGTTTACAGAATTGAACAGCTTGTTTCGTGGCATTGACAATGCTCTCCAAGTGTATGCAAATAATGTAGTTAATGAGTTGGCAAGCAAGGAGGAACTGATACCACCTGTGCCTATTCTTACACGATACAAAAAGGAAGCTGGAATAAAGGCTTTTGTAAAGAAGGAACTGTTTGATGCTCGTGTGCCTGAACCTGATGAAACAAGGCCCAGCCAAATTAGTGTCCTTGCAACTCCAACACTTTGTGTTCAATTAAATACATTATACTATGCAATTAGTCATCTGAATAAATTGGAAGACAACATCTGGGAGCGATGGACAAGTAAAAGGTCCCAAGAAAAACTCATAAAGAAATCCTTTGATGACAAGTCCAAAAGTTTTTCCCAAAAGGATACCTTTGAGGGAAGTAGAAAAGTTATAAATGCTGCTATGGACCGCATTTGTGAGTACACAGGAACTAAAATTGTCTTCTGTGATTTGAGAGTTCCATTTATGGACAACTTATATAAACCCAGTGTCTCTGGATGTAGGTTGGATGCACTTATAGAACCACTTGATATGGAACTTAGCCAACTTTGTGATATTGTTGTGGAGCCTCTCAGGGATCGCATAGTGACAAGTCTTCTTCAGGCATCATTGGATGGCTTACTCCGTGTTATCTTAGATGGGGGTCCATCGAGAGTTTTCTTCACCGGTGATGCAAAATTATTAGAGGAAGATCTGGAGGTGTTAAAGGAATTCTTTATATCTGGAGGTGACGGCCTCCCTCGGGGTGTAGTCGAAAATCAGGTTGCACGTGTTCGGCATGTGATCAAGTTGCACGGCTATGAGACGCGAGAGTTGATTGAAGACTTGAAATCTGCTAGTGGCATGGAAATGCAAGGTAGCAAAAGCAAATTGGGAACTGATTCCAAAACTCTATTAAGAATATTATGCCACAGGAGTGACTCAGAAGCCTCTCAATTTCTGAAGAAACAATACAAAATACCTAGTTCTTCTGCTTAG

Predicted protein sequences of Glyma13g26220

Limit To All Plant Sequences

>Glyma13g26220.1   sequence type=predicted peptide   gene model=Glyma13g26220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEENAIELLQRYRRDRRVLLDFILSGSLIKKVVMPPGAVTLDDVDLDQVSVDYVLNCAKKSTLLELSEAIRDYHDHTGLPQMSDTGSVGEFYLVTDPGSSGSPPRRPPPTVPTAVPPVAVSTPPVFPPSPIVSNVSRSESFDSTQEKELTVDDIEDFEDDDDVAVVEGFRAKRTLNDASDLAVKLPSFSTGISDDDLRETAYEILLACAGATGGLIVPSKEKKKDKKSSLIRKLGRSKSGSVVSQSQNAPGLVGLLETMRVQMEISESMDIRTRQGLLNALVGKVGKRMDTLLIPLELLCCISRSEFSDKKAFIRWQKRQLKVLEEGLVNHPAVGFGESGRKTNELRILLAKIEEAEFLPSSTGELQRTECLRSLREIAIPLAERPARGDLTGEICHWADGYHLNVRLYEKLLLSVFDMLDEGKLTEEVEEILELLKSTWRVLGITETIHQTCYAWVLFRQYVITREHGVLLHALEQLNKIPLMEQRGQQERLHLKSLHSKVEGERDMSFLQSFLTPIQRWTDKQLGDYHLHFNEGSATMEKIVAVAMITRRLLLEEPETSTQSLPISDRDQIEIYISSSIKNAFSRTVQVVDRVDMSHEHPLALLAEELKKFLKKESASFLPILSQRHPQATVVSASLVHKLYGHRLKPFLDSAEHLSEDVISVFPAAESLEQFIMALITSVCHEENAEILLKKLNLYQIEMKSGTLVLRWVNSQLGRILGWVERVIQQEHWDPISPQQRHAGSIVEVYRIVEETVDQFFGLKVPMRFTELNSLFRGIDNALQVYANNVVNELASKEELIPPVPILTRYKKEAGIKAFVKKELFDARVPEPDETRPSQISVLATPTLCVQLNTLYYAISHLNKLEDNIWERWTSKRSQEKLIKKSFDDKSKSFSQKDTFEGSRKVINAAMDRICEYTGTKIVFCDLRVPFMDNLYKPSVSGCRLDALIEPLDMELSQLCDIVVEPLRDRIVTSLLQASLDGLLRVILDGGPSRVFFTGDAKLLEEDLEVLKEFFISGGDGLPRGVVENQVARVRHVIKLHGYETRELIEDLKSASGMEMQGSKSKLGTDSKTLLRILCHRSDSEASQFLKKQYKIPSSSA*

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