Glyma13g26170 - SoyBase

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Report for Sequence Feature Glyma13g26170

Feature Type:	gene_model
Chromosome:	Gm13
Start:	29365002
stop:	29373213
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g26170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12280	AT	Annotation by Michelle Graham. TAIR10: retinoblastoma-related 1 \| chr3:3913671-3918433 REVERSE LENGTH=1012	SoyBase	E_val: 0	ISS
GO:0000082	GO-bp	Annotation by Michelle Graham. GO Biological Process: G1/S transition of mitotic cell cycle	SoyBase	N/A	ISS
GO:0001558	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell growth	SoyBase	N/A	ISS
GO:0001708	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell fate specification	SoyBase	N/A	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0006349	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression by genetic imprinting	SoyBase	N/A	ISS
GO:0008356	GO-bp	Annotation by Michelle Graham. GO Biological Process: asymmetric cell division	SoyBase	N/A	ISS
GO:0009553	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac development	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0009567	GO-bp	Annotation by Michelle Graham. GO Biological Process: double fertilization forming a zygote and endosperm	SoyBase	N/A	ISS
GO:0009960	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosperm development	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0022619	GO-bp	Annotation by Michelle Graham. GO Biological Process: generative cell differentiation	SoyBase	N/A	ISS
GO:0032875	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA endoreduplication	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0051302	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell division	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0051783	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of nuclear division	SoyBase	N/A	ISS
GO:2000036	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of stem cell maintenance	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008134	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription factor binding	SoyBase	N/A	ISS
KOG1010	KOG	Rb (Retinoblastoma tumor suppressor)-related protein	JGI		ISS
PTHR13742	Panther	RB RELATED	JGI		ISS
PTHR13742:SF1	Panther	RETINOBLASTOMA RELATED	JGI		ISS
PF01857	PFAM	Retinoblastoma-associated protein B domain	JGI		ISS
PF01858	PFAM	Retinoblastoma-associated protein A domain	JGI		ISS
PF11934	PFAM	Domain of unknown function (DUF3452)	JGI		ISS
UniRef100_I1JXF7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXF7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9M5G5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Retinoblastoma-like protein (Fragment) n=1 Tax=Euphorbia esula RepID=Q9M5G5_EUPES	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g26170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g26170

Paralog	Evidence	Comments
Glyma15g36890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g26170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g192400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g26170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g26170

Limit To All Plant Sequences

>Glyma13g26170.1   sequence type=CDS   gene model=Glyma13g26170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCCTCCTCCAGCTGAATCCAACGCCATGGAAGACGGCAAGCCCGAGAATGGCGGCGACCAAGTCGAGTCTCGCTTCTTTGAGTTCTGCAAGAATGGGCTAGCATTGGAAGAGAAAAGCTGTAAAGAAGCAACGAATCTGTTTGGAGAAACCAAGCATATTCTACTGTCAAATTTTTCGTCAATGGGAAACGGAACGTCTGAAGAAGCAGAGAGGTATTGGTTTGCTTTTATTTTGTACTCTGTCAAAAAATTGATCCAGAAAAATGATGAGGGTGAGAAGGAAGACACTGAGAACACTGGGCTTAGCTTGTGTCGTATATTGAGAGCAACAAAGCTTAACATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAGGCGAAGGAGATGCATGCCAATGCTATTCACTTGAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTTGTGGCAACTGACACAAATGCTGAAATAAACTCACCTATTACTGTTCATGCATCTGAATATCATCGATTTGGATGGTTGCTTTTCCTGGCACTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTAGTGACTTGCACTAATGGTTTAATTTCAATCTTGGCCATCTTAATTATTCATGTTCCTACTCGATTTCGGAATTTCAACATTCATGACTCCTCACGCTTTGTTAAGAAAAGTAACAAAGGTGTGGACCTCCTTGCATCACTTTGCAACATATACAACACTTCTGAAGATGAGTTGAGGAAAACCATGGAGAAAGCCAATAATGTAATAGCAGATATATTGAAGAAGCAGCCTTGCTTGGCATCTGAATGTGAAACCGAAAACCTAGAGAATATCGATAAAGATGGTTTGACCTATTTTAAAGACCTGATGGAAGAATCGTCTCTACCTTCTAGTCTAAGTATGTTAGAAAAAGATTATGATTACATGATTCGCAACAAGAGTGAATTGGATGAAAGGTTATTCATTAATGAGGATGACAGTCTATTAGCTTCAGTAAGCTTATCTGGAGGTTCTGTTTCAGCTGGTGGTGTAAAGAGGAAATTTGATTCAATGGCATCACCTGCTAAGACCATTACAAGTCCACTCTCACCACACCGCTCCCCCGCATCACATGCTAATGGCATCCCAGGTAGTGCAAACTCAAAGATGGCGGCCACCCCTGTAAGCACAGCAATGACTACTGCGAAGTGGCTTCGAACTGTCATTTCTCCACTTCCATCAAAGCCCTCGCCAGAGCTGGAACGATTTTTGACATCATGTGATAGAGATGCTACAAGTGATGTGGTTCGCAGAGCACAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTCGGAGAACGATGTGTAACTGGAAGCCTGCAAAGTGCAAACCTTATGGACAATATATGGGCCGAACAACGAAGACTGGAAGCACTGAAGTTATACTACAGGGTATTGGAAGCAATGTGCAGAGCAGAAGCCCAAGTACTTCATGCAACTAATTTAACCTCTCTACTTACCAATGAGAGGTTCCATCGGTGTATGCTTGCATGTTCTGCAGAGTTAGTCCTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTACTAGAGAGGACTGGAATTACAGCCTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCTCTCCCAAGAGAATTGAGAAGACATCTGAATTCATTGGAAGAACGTCTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAACTCTTTGGCAGTTGCCAGACCTTCCCTTTCTGCAGAGATAAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCATATTAACTTCTCTTGTGGAGGACTGCCGCCAGTGCCTACCTTGCCCAAACTTGAAAGCTCTTCAAATCAGAATGGGGATATCAGATCACCAAAGCGAAATGTTTTAATGGAAAGAAATTCTTTCACTTCACCAGTGAAAGATCGCCTTCTTCCCTTTAACAGCCTTAAGTCAAAACTACCCCCACCTCCTTTGCAGTCAGCATTTGCCAGCCCAACAAAGCCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATTTTTTTTGGCAAGATCATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAGTTATCTCAGCAGATAAGGGAGAATGTATATTCTCTTTTCCAGCGGATCCTTAATCAGTGGACATCTCTCTTTTTCAACCGTCATATTGACCAAATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGATTTCACAACTCAACCTAACTTTTAAGGAGATCGTATACAACTACAGAAAGCAACCACACTGCAAACCACAAGTTTTTCGTAGTGTATTTGTTGATTGGTCATTGGCTCGCCGAAATGGGAGAACAGGACAGGAGCATATTGACATAATTACCTTTTACAATGAAATATTCATTCCTTCTGTAAAGCCACTGCTTGTTGAACTTGGCCCTGCTGGACCAACTACAAAAAGCGACCGAATACCTGAAATTAATAAAAATGATGGCCATTTAGCTCAATGTCCAGGGTCTCCTAAAATATCACCTTTCCCAACCCTTCCTGATATGTCTCCAAAAAAAGTGTCAGCCACACATAACGTATATGTCTCTCCATTACGATCGTCCAAGATGGAGGCTCTAATATCACACAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCGTCAAAAGACCTGACCGCCATCAATAACCGTTTGAATGGCAACCGGAAGGTGAGAGGTCCCCTCAACTTTGATGATGTTGATATCGGGTTGGTGAGTGACTCTATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGCTGTGCTTCATCATCAGGTGCACCATTGAAATCAGAGCAACCTGACTCCTAG

Predicted protein sequences of Glyma13g26170

Limit To All Plant Sequences

>Glyma13g26170.1   sequence type=predicted peptide   gene model=Glyma13g26170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPPPAESNAMEDGKPENGGDQVESRFFEFCKNGLALEEKSCKEATNLFGETKHILLSNFSSMGNGTSEEAERYWFAFILYSVKKLIQKNDEGEKEDTENTGLSLCRILRATKLNIADFFKELPQFVVKAGPTLSNLYGTDWENRLEAKEMHANAIHLKILSKYYKRVFGEFFVATDTNAEINSPITVHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPTRFRNFNIHDSSRFVKKSNKGVDLLASLCNIYNTSEDELRKTMEKANNVIADILKKQPCLASECETENLENIDKDGLTYFKDLMEESSLPSSLSMLEKDYDYMIRNKSELDERLFINEDDSLLASVSLSGGSVSAGGVKRKFDSMASPAKTITSPLSPHRSPASHANGIPGSANSKMAATPVSTAMTTAKWLRTVISPLPSKPSPELERFLTSCDRDATSDVVRRAQIILQAIFPSSPLGERCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQVLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPSLSAEINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPTLPKLESSSNQNGDIRSPKRNVLMERNSFTSPVKDRLLPFNSLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYSLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFKEIVYNYRKQPHCKPQVFRSVFVDWSLARRNGRTGQEHIDIITFYNEIFIPSVKPLLVELGPAGPTTKSDRIPEINKNDGHLAQCPGSPKISPFPTLPDMSPKKVSATHNVYVSPLRSSKMEALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDIGLVSDSMVANSLYLQNGSCASSSGAPLKSEQPDS*

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