SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G12320 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06980.4); Has 102 Blast hits to 102 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:3924034-3925262 FORWARD LENGTH=269 | SoyBase | E_val: 8.00E-23 | ISS |
| GO:0007623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian rhythm | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0010264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_E4MVG7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-01-A04 n=1 Tax=Eutrema halophilum RepID=E4MVG7_THEHA | SoyBase | E_val: 3.00E-21 | ISS |
| UniRef100_I1M0M5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0M5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g26110 not represented in the dataset |
Glyma13g26110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g36790 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g191900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g26110.1 sequence type=CDS gene model=Glyma13g26110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACTGGTACTATGGATGTGAAAGTAGTGATTTTCTTGTTCCCAAAGATCAAGAAGATTTATTGGAAAGGCATCCTTCACCAGAAAATTGGTCAGAATGGGGAATAAATGCACCTGAAGGCTTTAATTCACCCCAGGAGTATTTGATCATGGACACAGATGAAACAGAAGTAGAATTCAATTTCATTGATGAAAGTTTCAAAAATGAAATTGAGTTTGACCCTTGTCTGTATGATAAAGATCAGTCTAGCAGTTCAAGTGCATGTGGAGGATTGCCTGAGCAATCGTTTCAACAAACGGAACTTTCGTGTGATCACCAGCTTCAAGACCAATCAACTTTAGAACAGAAGGATGACATTTTCTTGGATTCTGTACTTGAAGATTTTCCATGTGTTGAAAGCCTACGCAAATCTTTCTTTTACCCTGAAAACCAGTGCAGCAACACAACTGGTGGAGTGCAGAAAGATATTGCAGCTTCAGGGTTTGTTCCATGTAACTCAGACTCCAAGGATTGCCTGGATATAGAGTTCAATGAAGATGACATCATGGTTGAGCAGTTATCTCTTGAGGAATTTACACTGCAGGGTTTTGAGATGTTAATTGCACAGTTCACTGAGAAGACTCGTATTTGTTTCCGAGATGCCCTTTACCGTCTTGCTAGAAATACAAAACAACATGTAGTAGAGGACCTGGATGGAGATCTTAACATGCATCAGGAAATGCCAGACTCAGTTTACAATGATACCATGAGGTCTGAGGACAGTAAACCAATGGAATCAGAGACCAACAGTATTGACAGAGCAGTTGCAAATCTCATGTTCAACAAGATGGAAATTAACATAATAGATCTTCCCCTTACAACACTAGTAAACTTGAAGAAAGAAGTAATTGGAAGTAAAGGTCTTCAAGGAAAAAGCTCAAAAGCCTTGGATGTGACAAAAAAATCTCACTCTCCACACGCAGAAAAGTTACCTGCTGATGCTGAGGTTCCAAGGTTTGAACCAGAGGATCAACAAGAAGCCACAGAATCATATATTGCCTAA
>Glyma13g26110.1 sequence type=predicted peptide gene model=Glyma13g26110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDWYYGCESSDFLVPKDQEDLLERHPSPENWSEWGINAPEGFNSPQEYLIMDTDETEVEFNFIDESFKNEIEFDPCLYDKDQSSSSSACGGLPEQSFQQTELSCDHQLQDQSTLEQKDDIFLDSVLEDFPCVESLRKSFFYPENQCSNTTGGVQKDIAASGFVPCNSDSKDCLDIEFNEDDIMVEQLSLEEFTLQGFEMLIAQFTEKTRICFRDALYRLARNTKQHVVEDLDGDLNMHQEMPDSVYNDTMRSEDSKPMESETNSIDRAVANLMFNKMEINIIDLPLTTLVNLKKEVIGSKGLQGKSSKALDVTKKSHSPHAEKLPADAEVPRFEPEDQQEATESYIA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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