Glyma13g25940 - SoyBase

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Report for Sequence Feature Glyma13g25940

Feature Type:	gene_model
Chromosome:	Gm13
Start:	29169372
stop:	29172440
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g25940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G53530	AT	Annotation by Michelle Graham. TAIR10: Peptidase S24/S26A/S26B/S26C family protein \| chr1:19978249-19979778 FORWARD LENGTH=168	SoyBase	E_val: 1.00E-44	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008233	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase activity	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
KOG0171	KOG	Mitochondrial inner membrane protease, subunit IMP1	JGI		ISS
PTHR12383	Panther	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	JGI		ISS
PTHR12383:SF9	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00717	PFAM	Peptidase S24-like	JGI		ISS
UniRef100_G7LGV1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial inner membrane protease subunit n=1 Tax=Medicago truncatula RepID=G7LGV1_MEDTR	SoyBase	E_val: 2.00E-60	ISS
UniRef100_I1M0L4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1M0L4_SOYBN	SoyBase	E_val: 2.00E-129	ISS

Expression Patterns of Glyma13g25940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g25940 not represented in the dataset	Glyma13g25940 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g25940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g190200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g25940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g25940

Limit To All Plant Sequences

>Glyma13g25940.1   sequence type=CDS   gene model=Glyma13g25940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATATTGAGAAACCTGGAGGCATTTGTGCCTATTATTAAAGCAGGATGGAGGTTTTCTAAGATCTACTGTTTTATACACGTTACCCAAACCTATTTGATCGCCCCTGCTGTGACCTATGGTCCTAGCATGCTTCCTACTATCGATTTGAAAACAGCTGTGTTCTTAATGGAAAAGATCTCACCCCGGTTTGGTAAAGTTACTTGTGGAGATATTGTAGTCTTGCGCAATCCTCAACACCCTAGGCACTTTATGACCAAACGTGTGGTTGGATTGGAGGGTGATAGCGTTACATACATTTCCAATCCTGAGACCTATGAATATGAGGGTGATAGTTTTACACACATTTCCTCTCCTGATAACGGTGATAAGTCTAAGACGATTGTGGTGCCAAAGGGTGCCGTTTGGGTTGAGGGAGATAACAAGTATAACAGCAATGATTCAAGAAAATTTGGTCCTGTTCCTTATGACCTTATTGATGGCAAGATGTTCTGGAGGATAACGCCACTTAAAAAATTTGGACCTTTCTGGAATAAATGA

Predicted protein sequences of Glyma13g25940

Limit To All Plant Sequences

>Glyma13g25940.1   sequence type=predicted peptide   gene model=Glyma13g25940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILRNLEAFVPIIKAGWRFSKIYCFIHVTQTYLIAPAVTYGPSMLPTIDLKTAVFLMEKISPRFGKVTCGDIVVLRNPQHPRHFMTKRVVGLEGDSVTYISNPETYEYEGDSFTHISSPDNGDKSKTIVVPKGAVWVEGDNKYNSNDSRKFGPVPYDLIDGKMFWRITPLKKFGPFWNK*

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