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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G38720 | AT | Annotation by Michelle Graham. TAIR10: microtubule-associated protein 65-5 | chr2:16188047-16192102 FORWARD LENGTH=587 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0046785 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule polymerization | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0005819 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: spindle | SoyBase | N/A | ISS |
| GO:0005874 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: microtubule | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009524 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast | SoyBase | N/A | ISS |
| GO:0009574 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: preprophase band | SoyBase | N/A | ISS |
| GO:0055028 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cortical microtubule | SoyBase | N/A | ISS |
| GO:0008017 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: microtubule binding | SoyBase | N/A | ISS |
| KOG4302 | KOG | Microtubule-associated protein essential for anaphase spindle elongation | JGI | ISS | |
| PTHR19321 | Panther | PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED | JGI | ISS | |
| PF03999 | PFAM | Microtubule associated protein (MAP65/ASE1 family) | JGI | ISS | |
| UniRef100_G7LID1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein regulator of cytokinesis n=1 Tax=Medicago truncatula RepID=G7LID1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M0K4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0K4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g25880 not represented in the dataset |
Glyma13g25880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g189600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g25880.1 sequence type=CDS gene model=Glyma13g25880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCCACGCCTCCTTCGTTCTCTCCCTCTCGCACAACCTGCGCCTCTCTCCTCCGCGAATTGCAGATGATATGGGATGAGATTGGGGAGAGTGACAACGATAGAGACAACACGCTTCTTCAACTGGAGCAAGAGTGCCTGGACATTTATCACCGGAGAGTCGAGGAGACGAGGAAGCACAAGGCTGACCTGTATCAGTGGTTGGCTGAAGCTGAAGCGGAAGTAGCCAATATTGTTTCTTCCCTTGGAGAATGTACCATACTTCCACGGGGGAAAGGAACTCTGAAGCAGCAAATAGCTACCATTAGACCTGTCATAGAGGACTTGAGGTCAAAGAAGGATGACAGAATCAAGGAATTTTCGAAGATAAAGTCTCAAATTTCTCAGATATGTGCTGAAATAGCAGGTTGTGGACAATACAATAGTGTCACAGATTCAGATAATCAAAGTGACCTGACAACAAAGAAATTGCGAGAACTCAAGTCGCATCTCCAGGAGCTTCAGAATGAAAAGATCTTGCGCCAGCAGAAAGTGAAGAGTCATATTAGTACTATTAGTGAGCTTACAGTAGTAATGTCAATGGATTTTAGGGAGACACTAAATGAAATTCACCCAAGCTTGGGAGATTCATCGAAAGGTACGCTACAGAGCATCAGCAATGACACTCTTGCCAGATTAACTGGGGTTATTCATTCATTAAAGAGGGAGAAGCAAAAAAGGCTACAAAAGATACAAGAGCTTGCTAAATTGCTGGTAGAGCTATGGGAACTTATGGAGACACCAATTGAAGATCAGCAGGCCTTTAGCCATGTTACTAGATTAATTTCAGCATCAGTTGATGAAGTGTCTACAGAATGTTGCCTTTCTGCAGAAGTCATTGAGCAGGTTGAAGTTGAAGTCCAGCGACTAAATGTTGTGAAAGCCAGTAAGATGAAGGATTTAGTGTTTAAGAGGCAGAATGAGCTTGAAGAAATTTACAGAGGAGTTCACATGGATGTTGATAGTGAAGCTGCCAGACAGATTTTGACCAGCCTCATCGAATCTGGTAATATTGATCTGTCTGATTTGCTTCAAAGCATGGATGATCAAATAAGACAAGCCAAAGAGCAAGCTCTAAGCAGAAGAGATATCTTAGATAGGGTAGAGAAATGGAAATTTGCAGCTGAGGAGGAAAAGTGGTTAGATGAATATGAAAGGGATGAAAACCGATATAGTGCAGTAAGAGGAGCACACAAAAATTTGAAACGTGCTGAGAAAGCACGGATTCTTGTCAGCAAGTTACCATCTATTGTTGAGAATTTGACTGCAAAAGTAAAAGCATGGGAAATGGAAAAAGGAATACCTTTCTTATATGAAAAGGTTCCATTGTTACATAACTTGGATGAATATATTGTACAACGGCAACTGAGAGAAGAAGAGAAGCGCAAATATCGGGAGCAGAAGAGGCTACAAGAACAACACGCTGTAGAGCAAGAGGCACTTTTTGGTTCAAGGTCTGCAACAAAAAAGCCTCTGGGTCAGAGCACTCATGCTAACACCATACTTGGGACACCAACTGGGCGTCGAATGCTTTCGACGCCTTCTGGCCGCCATGGAAACTCAGGAGGAAAGGACCGTAGAGAAAGTGGCAGAGTGAACAGCATAATTCCAGTGAACTATGTTGCTCTTCCAAAAGATGACTCTGTTTCTAGGGGGAATTAA
>Glyma13g25880.1 sequence type=predicted peptide gene model=Glyma13g25880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAATPPSFSPSRTTCASLLRELQMIWDEIGESDNDRDNTLLQLEQECLDIYHRRVEETRKHKADLYQWLAEAEAEVANIVSSLGECTILPRGKGTLKQQIATIRPVIEDLRSKKDDRIKEFSKIKSQISQICAEIAGCGQYNSVTDSDNQSDLTTKKLRELKSHLQELQNEKILRQQKVKSHISTISELTVVMSMDFRETLNEIHPSLGDSSKGTLQSISNDTLARLTGVIHSLKREKQKRLQKIQELAKLLVELWELMETPIEDQQAFSHVTRLISASVDEVSTECCLSAEVIEQVEVEVQRLNVVKASKMKDLVFKRQNELEEIYRGVHMDVDSEAARQILTSLIESGNIDLSDLLQSMDDQIRQAKEQALSRRDILDRVEKWKFAAEEEKWLDEYERDENRYSAVRGAHKNLKRAEKARILVSKLPSIVENLTAKVKAWEMEKGIPFLYEKVPLLHNLDEYIVQRQLREEEKRKYREQKRLQEQHAVEQEALFGSRSATKKPLGQSTHANTILGTPTGRRMLSTPSGRHGNSGGKDRRESGRVNSIIPVNYVALPKDDSVSRGN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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