SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G15780 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). | chr1:5430446-5435921 REVERSE LENGTH=1335 | SoyBase | E_val: 3.00E-46 | ISS |
| GO:0001676 | GO-bp | Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0002213 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to insect | SoyBase | N/A | ISS |
| GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| UniRef100_G8A1U8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G8A1U8_MEDTR | SoyBase | E_val: 4.00E-96 | ISS |
| UniRef100_Q8H6Q7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CTV.22 n=1 Tax=Citrus trifoliata RepID=Q8H6Q7_PONTR | SoyBase | E_val: 4.00E-49 | ISS |
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Glyma13g25851 not represented in the dataset |
Glyma13g25851 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g189300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g25851.1 sequence type=CDS gene model=Glyma13g25851 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACACAAACAAAACGAAACCTACTGAACAACAAACCATGACCGTCAAGTGGAAATTTCCAGAGTATCGTAAAGCTGTTGTGAAGAAATGCGTGGAAGGGGTAATTAAGCAAAGTGGTTTACCTTTGGCACGCTTAAATGGGCTTGTTCAGTTTCTGGAAAGATTTGAGGCAAAAGTGAATGCTGCTGCCAAAAATGAGGTTGAGTACCTTAAATCGTTATCTGAAAAGGTAAAAGAAATATCTTCACAACTAAAGACTGCTGAATCCAAACCTCGTCCCTCGAACTCTACTGGCTCAGTGGAAGTCTGCTCTGCTCAAGAAGCTGGAAAATCTGCAAATACAGAATGGAAGGAGCAGGTTTATCAAAGGGTTCAAAGGATGAATAGTGCATATTTCCCAACAGTTAATACCATTTACCAACAGATGAATAGAAAACTGCAACAGCTTGAGTCTTCTCCTCAAGAACCAAACACAGTGGAAAGAATGAGATTCAATATGAAATTATTAGAACAGATTTTGGCAATCTTGAGAGTGAATAAATGGCAGATTACTACTGAATTCAAGGAGAACCTAGACAAAGCAGAAAAGTTTATACAATCTAAATTTTTCTCTAAGAATGTTTCTTCACATCATCAAGGACAACAACGTTCAGCTGATGTGCAATCCAGGCAACAGTCTGGTCCATCACATTCTAGTATTTCCCCATTGATGATACTTGAAATGAAACCATCACCACAAGCATTGGGGTCACAGAACTATCATCCGATGAAGGATGTTTCTCAGCAAAACAAAATGTGTTTACAAGAGAAGCAAGCGGCAAAACAATATGGTGGTTCACAGCAGTCTGGTCCATCACATTCTAGTATTTCCCCAGTGAAAACACTTGAAATGAGACCATCACCACAAGCATTGGGAACACAGAACTATCATATGATGAAGGATGTTTCTCAGCAGAACAAGATGTGTCTACAAGAGAAGCAAGTGACAATAAAATATCGCAACTTACAACAGGATGTAAATCAACTCTCTATCATAAAAGGTGCTGGCAATACTGTACAACAGCAAACACAAGGGACACAAAAAGCAACTGAAGCATTTAGTGTCAGTGTCAACAGTCAGGGTATTTCAGCTTCACCCTTGATTGAAAACTGCAATAATCTTAAAGAAATTTCCCGTAAACCTACACTCACTTCTGATGAGCCAAGTGCTGCAATGCAATACTTTCTTAAAGTGTTAACCTCCATATCACCTGAAGCATTGAGTGCATCGCTTGGTGAAATTAGAGAGGTAGTCTATTTGAATGATGCAATACCAAGTCCAGAATTGATGCATGGACCACCAGAGATGGTTCAACAACAAATGCAACCATGCCTCATCTCACAAACAGGGATAAATTTAGCATCGGATATTGAGCCATGCTCACAAGCTAGATACATCACTTGCAATGATTTTGTTCCAACAGGAAGGAAAAGGTCTTGCAGCATGAATTCAATGACTGCCTTTGACACTTCTAGTACTTGTGCTAGTTCATGTGACAGTAACCAGTTGACTGATACTGAGAAACCTGACTTGACTTTAGTCACATCAAAGCATCCTAGAATTGTGGAAAAATGTTCTCTTTTAGAAGAAATAAAGGAGATAAATAATCTATTGATAGACAGTGAGATAGTTATTGGAGAAAAAGACAGCATTCAAAGTGCAGCTGGAGGAGCTGCTGAAGATGGTGAAGGTTTGGTTATTAAATTCCTTTTCAATGCAGTAACTTTCAATCAGAACCTAATATCCCATCTTTCTGCTGATAAAAAGTCAATAATCAAACCGTTATGGTTGCTTGTTCCCGCAAGTTATCCATTTTGCCCACCTGTTGTATTAGACAAAATGCCGTTGGAAGTCAGTGATGGCATGGAAGATCTATCAACAATAGCAAAATCAAAGCTGAGACAGTTTCTCCAATGCTTAAACCAACCCTGGTCACTTGGGGATATAGCAATGTTATGGGAGCGCTGTGCCAGAGAAGCAATTCTTGAGTATGCAAAATGCATTGGTGGAGGAACCTTTAGCTCAATATATGGAGGGTGGAATATGTGTCAAAATTATGATGCTTAA
>Glyma13g25851.1 sequence type=predicted peptide gene model=Glyma13g25851 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDTNKTKPTEQQTMTVKWKFPEYRKAVVKKCVEGVIKQSGLPLARLNGLVQFLERFEAKVNAAAKNEVEYLKSLSEKVKEISSQLKTAESKPRPSNSTGSVEVCSAQEAGKSANTEWKEQVYQRVQRMNSAYFPTVNTIYQQMNRKLQQLESSPQEPNTVERMRFNMKLLEQILAILRVNKWQITTEFKENLDKAEKFIQSKFFSKNVSSHHQGQQRSADVQSRQQSGPSHSSISPLMILEMKPSPQALGSQNYHPMKDVSQQNKMCLQEKQAAKQYGGSQQSGPSHSSISPVKTLEMRPSPQALGTQNYHMMKDVSQQNKMCLQEKQVTIKYRNLQQDVNQLSIIKGAGNTVQQQTQGTQKATEAFSVSVNSQGISASPLIENCNNLKEISRKPTLTSDEPSAAMQYFLKVLTSISPEALSASLGEIREVVYLNDAIPSPELMHGPPEMVQQQMQPCLISQTGINLASDIEPCSQARYITCNDFVPTGRKRSCSMNSMTAFDTSSTCASSCDSNQLTDTEKPDLTLVTSKHPRIVEKCSLLEEIKEINNLLIDSEIVIGEKDSIQSAAGGAAEDGEGLVIKFLFNAVTFNQNLISHLSADKKSIIKPLWLLVPASYPFCPPVVLDKMPLEVSDGMEDLSTIAKSKLRQFLQCLNQPWSLGDIAMLWERCAREAILEYAKCIGGGTFSSIYGGWNMCQNYDA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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