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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G44850 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0565 (InterPro:IPR018881); Has 106 Blast hits to 106 proteins in 50 species: Archae - 0; Bacteria - 0; Metaz | SoyBase | E_val: 1.00E-122 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2800 | KOG | Conserved developmentally regulated protein | JGI | ISS | |
| PF10561 | PFAM | Uncharacterised protein family UPF0565 | JGI | ISS | |
| UniRef100_I1M0I9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0I9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g25700 not represented in the dataset |
Glyma13g25700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g187300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g25700.3 sequence type=transcript gene model=Glyma13g25700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATATAATTCTATGAATAGATGATAGTATTTTCTTTCAATACTCCAAAACAAAACCCGCACCATGAAGAACTCGCAAACCCGAGCAGAGGGAGAAACGCAACTATGAGAATCAGAAAAGCGTAACTTGTAAATGGAACGTTGGAGTGGAGTTTTGAGAGTCCCACTGCATCCTAACAGCAGGACATTCCATAGAGTTGGGGCATCTCTCTGCCTTTCTCCTGAAACCAGAACTCTGCTTGTACCTAAAGCCAATGCCATCTTTTTCTGTGGGGATCGAGTTGAAGGGACTGGTAACCCAGTGATTGAGAGGCTATCAAATTTACAAAAACTATCTGAAATTATTGTGTCCAAATTCGGTTCATTCACCAATGCTTGGGTTATTGAGGCTTCTGCTTTTAATGGACCTTTCGCTGTCTATAAAGACTTCATACCATCTGTGAATCAATATGGAGAGCCAAGTTCATACCATCCAAATGGATTCCCAGCATCTACATCAACTGTCTCACTCTTATCTAATTGCCTTGAAGAAGCCAAAAAAGTCATTTTAGGAACACAAGTAGATACAAAGTCTGGCTTGAGTCCTTCGTGTTCTTTCTCTCGATCCAAGACATTCATCCTTGGATTTAGCAAAGGTGGAGCTGTACTTAACCAGATAGTTACTGAGCTTGGATTCTCAGATATTGGATCCAATGCGAATTCACCTGATGTGGGACAGCTTATGGGCAGAAAGTTCGCCGGATCTGAGGAGATTTATGTTGTACCTAAAACAAAGGAAGACTTGCTGAACAGCATTAGTGAGATTCATTATGTTGATGTTGGTCTCAACTCTGCTGGGGCATACTTAACTAACCATGATGTGTTTGAGAGAATCTCCAAGAGGCTCATGCAAGGAGCTTCTGAACTCCGTTTTATCCTACATGGAACTCCGAGACAATGGAGTGACAAGCGGCGAGATTGGATACGAAACGAAAAGGACAAAATGCTGCGTCTGCTTGAATCTGAAGCCCCAAAGAGTGGGGGAAAATTAAAAGTATTAGAAAGGTTTTATTTTACTGATAAGCCTCCAAGCATGCAGATGCACTTTGAAATTATAGAAAGTTTAGATGCAAGTTAGTAGTTCATTCTTGATAGGTCTACTGGAGTCTTTGCTATAAAAGCTTTTGAGGGATGGGGGGCTGAAGACCCTGCTAGCCCCCGCATAAATCCGTCCCTGATCATTAACCAGTCAATATTCTGCAAGAATATGTCATATCTGAGAATTATCAAAAGAATAGTAAAATTGGACCATTGCATCTTTTGTTATCTCCTCCTACGTGTCAGACTATCTATGACCAAAGATGATTGTAATCATTGAAGTGGTTATCATTGTAATTATAATACTCCAATTTAAATCTTCTGTAGATAAACAATTGGTGATCAAAGTAAAAACTCCTCTGCTATGTGGTGTATGAAAGACAATGGAATATTTAAGACAATGTGGCTTGCAGATAAGATGCAAATTTTGGGTAAATTTCAAATATGAAAGACTCTCAACATTATATAATTGTTTTGGGTATTAGAAGA >Glyma13g25700.4 sequence type=transcript gene model=Glyma13g25700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAATTCATAATAAATTATATATTTAAATTTATGAATTTTCCCATTTTCCAGGTATTTTCTTTCAATACTCCAAAACAAAACCCGCACCATGAAGAACTCGCAAACCCGAGCAGAGGGAGAAACGCAACTATGAGAATCAGAAAAGCGTATTTTATGCCCTCTATGCAATACACTCAACTTCCAATATTCACTGTGCTTGATGCCAAACATTCTGCCAAGACTTGTAAATGGAACGTTGGAGTGGAGTTTTGAGAGTCCCACTGCATCCTAACAGCAGGACATTCCATAGAGTTGGGGCATCTCTCTGCCTTTCTCCTGAAACCAGAACTCTGCTTGTACCTAAAGCCAATGCCATCTTTTTCTGTGGGGATCGAGTTGAAGGGACTGGTAACCCAGTGATTGAGAGGCTATCAAATTTACAAAAACTATCTGAAATTATTGTGTCCAAATTCGGTTCATTCACCAATGCTTGGGTTATTGAGGCTTCTGCTTTTAATGGACCTTTCGCTGTCTATAAAGACTTCATACCATCTGTGAATCAATATGGAGAGCCAAGTTCATACCATCCAAATGGATTCCCAGCATCTACATCAACTGTCTCACTCTTATCTAATTGCCTTGAAGAAGCCAAAAAAGTCATTTTAGGAACACAAGTAGATACAAAGTCTGGCTTGAGTCCTTCGTGTTCTTTCTCTCGATCCAAGACATTCATCCTTGGATTTAGCAAAGGTGGAGCTGTACTTAACCAGATAGTTACTGAGCTTGGATTCTCAGATATTGGATCCAATGCGAATTCACCTGATGTGGGACAGCTTATGGGCAGAAAGTTCGCCGGATCTGAGGAGATTTATGTTGTACCTAAAACAAAGGAAGACTTGCTGAACAGCATTAGTGAGATTCATTATGTTGATGTTGGTCTCAACTCTGCTGGGGCATACTTAACTAACCATGATGTGTTTGAGAGAATCTCCAAGAGGCTCATGCAAGGAGCTTCTGAACTCCGTTTTATCCTACATGGAACTCCGAGACAATGGAGTGACAAGCGGCGAGATTGGATACGAAACGAAAAGGACAAAATGCTGCGTCTGCTTGAATCTGAAGCCCCAAAGAGTGGGGGAAAATTAAAAGTATTAGAAAGGTTTTATTTTACTGATAAGCCTCCAAGCATGCAGATGCACTTTGAAATTATAGAAAGTTTAGATGCAAGTTAGTAGTTCATTCTTGATAGGTCTACTGGAGTCTTTGCTATAAAAGCTTTTGAGGGATGGGGGGCTGAAGACCCTGCTAGCCCCCGCATAAATCCGTCCCTGATCATTAACCAGTCAATATTCTGCAAGAATATGTCATATCTGAGAATTATCAAAAGAATAGTAAAATTGGACCATTGCATCTTTTGTTATCTCCTCCTACGTGTCAGACTATCTATGACCAAAGATGATTGTAATCATTGAAGTGGTTATCATTGTAATTATAATACTCCAATTTAAATCTTCTGTAGATAAACAATTGGTGATCAAAGTAAAAACTCCTCTGCTATGTGGTGTATGAAAGACAATGGAATATTTAAGACAATGTGGCTTGCAGATAAGATGCAAATTTTGGGTAAATTTCAAATATGAAAGACTCTCAACATTATATAATTGTTTTGGGTATTAGAAGA
>Glyma13g25700.2 sequence type=CDS gene model=Glyma13g25700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACGTTGGAGTGGAGTTTTGAGAGTCCCACTGCATCCTAACAGCAGGACATTCCATAGAGTTGGGGCATCTCTCTGCCTTTCTCCTGAAACCAGAACTCTGCTTGTACCTAAAGCCAATGCCATCTTTTTCTGTGGGGATCGAGTTGAAGGGACTGGTAACCCAGTGATTGAGAGGCTATCAAATTTACAAAAACTATCTGAAATTATTGTGTCCAAATTCGGTTCATTCACCAATGCTTGGGTTATTGAGGCTTCTGCTTTTAATGGACCTTTCGCTGTCTATAAAGACTTCATACCATCTGTGAATCAATATGGAGAGCCAAGTTCATACCATCCAAATGGATTCCCAGCATCTACATCAACTGTCTCACTCTTATCTAATTGCCTTGAAGAAGCCAAAAAAGTCATTTTAGGAACACAAGTAGATACAAAGTCTGGCTTGAGTCCTTCGTGTTCTTTCTCTCGATCCAAGACATTCATCCTTGGATTTAGCAAAGGTGGAGCTGTACTTAACCAGATAGTTACTGAGCTTGGATTCTCAGATATTGGATCCAATGCGAATTCACCTGATGTGGGACAGCTTATGGGCAGAAAGTTCGCCGGATCTGAGGAGATTTATGTTGTACCTAAAACAAAGGAAGACTTGCTGAACAGCATTAGTGAGATTCATTATGTTGATGTTGGTCTCAACTCTGCTGGGGCATACTTAACTAACCATGATGTGTTTGAGAGAATCTCCAAGAGGCTCATGCAAGGAGCTTCTGAACTCCGTTTTATCCTACATGGAACTCCGAGACAATGGAGTGACAAGCGGCGAGATTGGATACGAAACGAAAAGGACAAAATGCTGCGTCTGCTTGAATCTGAAGCCCCAAAGAGTGGGGGAAAATTAAAAGTATTAGAAAGGTTTTATTTTACTGATAAGCCTCCAAGCATGCAGATGCACTTTGAAATTATAGAAAGTTTAGATGCAAGTTAG >Glyma13g25700.3 sequence type=CDS gene model=Glyma13g25700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACGTTGGAGTGGAGTTTTGAGAGTCCCACTGCATCCTAACAGCAGGACATTCCATAGAGTTGGGGCATCTCTCTGCCTTTCTCCTGAAACCAGAACTCTGCTTGTACCTAAAGCCAATGCCATCTTTTTCTGTGGGGATCGAGTTGAAGGGACTGGTAACCCAGTGATTGAGAGGCTATCAAATTTACAAAAACTATCTGAAATTATTGTGTCCAAATTCGGTTCATTCACCAATGCTTGGGTTATTGAGGCTTCTGCTTTTAATGGACCTTTCGCTGTCTATAAAGACTTCATACCATCTGTGAATCAATATGGAGAGCCAAGTTCATACCATCCAAATGGATTCCCAGCATCTACATCAACTGTCTCACTCTTATCTAATTGCCTTGAAGAAGCCAAAAAAGTCATTTTAGGAACACAAGTAGATACAAAGTCTGGCTTGAGTCCTTCGTGTTCTTTCTCTCGATCCAAGACATTCATCCTTGGATTTAGCAAAGGTGGAGCTGTACTTAACCAGATAGTTACTGAGCTTGGATTCTCAGATATTGGATCCAATGCGAATTCACCTGATGTGGGACAGCTTATGGGCAGAAAGTTCGCCGGATCTGAGGAGATTTATGTTGTACCTAAAACAAAGGAAGACTTGCTGAACAGCATTAGTGAGATTCATTATGTTGATGTTGGTCTCAACTCTGCTGGGGCATACTTAACTAACCATGATGTGTTTGAGAGAATCTCCAAGAGGCTCATGCAAGGAGCTTCTGAACTCCGTTTTATCCTACATGGAACTCCGAGACAATGGAGTGACAAGCGGCGAGATTGGATACGAAACGAAAAGGACAAAATGCTGCGTCTGCTTGAATCTGAAGCCCCAAAGAGTGGGGGAAAATTAAAAGTATTAGAAAGGTTTTATTTTACTGATAAGCCTCCAAGCATGCAGATGCACTTTGAAATTATAGAAAGTTTAGATGCAAGTTAG >Glyma13g25700.4 sequence type=CDS gene model=Glyma13g25700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACGTTGGAGTGGAGTTTTGAGAGTCCCACTGCATCCTAACAGCAGGACATTCCATAGAGTTGGGGCATCTCTCTGCCTTTCTCCTGAAACCAGAACTCTGCTTGTACCTAAAGCCAATGCCATCTTTTTCTGTGGGGATCGAGTTGAAGGGACTGGTAACCCAGTGATTGAGAGGCTATCAAATTTACAAAAACTATCTGAAATTATTGTGTCCAAATTCGGTTCATTCACCAATGCTTGGGTTATTGAGGCTTCTGCTTTTAATGGACCTTTCGCTGTCTATAAAGACTTCATACCATCTGTGAATCAATATGGAGAGCCAAGTTCATACCATCCAAATGGATTCCCAGCATCTACATCAACTGTCTCACTCTTATCTAATTGCCTTGAAGAAGCCAAAAAAGTCATTTTAGGAACACAAGTAGATACAAAGTCTGGCTTGAGTCCTTCGTGTTCTTTCTCTCGATCCAAGACATTCATCCTTGGATTTAGCAAAGGTGGAGCTGTACTTAACCAGATAGTTACTGAGCTTGGATTCTCAGATATTGGATCCAATGCGAATTCACCTGATGTGGGACAGCTTATGGGCAGAAAGTTCGCCGGATCTGAGGAGATTTATGTTGTACCTAAAACAAAGGAAGACTTGCTGAACAGCATTAGTGAGATTCATTATGTTGATGTTGGTCTCAACTCTGCTGGGGCATACTTAACTAACCATGATGTGTTTGAGAGAATCTCCAAGAGGCTCATGCAAGGAGCTTCTGAACTCCGTTTTATCCTACATGGAACTCCGAGACAATGGAGTGACAAGCGGCGAGATTGGATACGAAACGAAAAGGACAAAATGCTGCGTCTGCTTGAATCTGAAGCCCCAAAGAGTGGGGGAAAATTAAAAGTATTAGAAAGGTTTTATTTTACTGATAAGCCTCCAAGCATGCAGATGCACTTTGAAATTATAGAAAGTTTAGATGCAAGTTAG
>Glyma13g25700.2 sequence type=predicted peptide gene model=Glyma13g25700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MERWSGVLRVPLHPNSRTFHRVGASLCLSPETRTLLVPKANAIFFCGDRVEGTGNPVIERLSNLQKLSEIIVSKFGSFTNAWVIEASAFNGPFAVYKDFIPSVNQYGEPSSYHPNGFPASTSTVSLLSNCLEEAKKVILGTQVDTKSGLSPSCSFSRSKTFILGFSKGGAVLNQIVTELGFSDIGSNANSPDVGQLMGRKFAGSEEIYVVPKTKEDLLNSISEIHYVDVGLNSAGAYLTNHDVFERISKRLMQGASELRFILHGTPRQWSDKRRDWIRNEKDKMLRLLESEAPKSGGKLKVLERFYFTDKPPSMQMHFEIIESLDAS* >Glyma13g25700.3 sequence type=predicted peptide gene model=Glyma13g25700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MERWSGVLRVPLHPNSRTFHRVGASLCLSPETRTLLVPKANAIFFCGDRVEGTGNPVIERLSNLQKLSEIIVSKFGSFTNAWVIEASAFNGPFAVYKDFIPSVNQYGEPSSYHPNGFPASTSTVSLLSNCLEEAKKVILGTQVDTKSGLSPSCSFSRSKTFILGFSKGGAVLNQIVTELGFSDIGSNANSPDVGQLMGRKFAGSEEIYVVPKTKEDLLNSISEIHYVDVGLNSAGAYLTNHDVFERISKRLMQGASELRFILHGTPRQWSDKRRDWIRNEKDKMLRLLESEAPKSGGKLKVLERFYFTDKPPSMQMHFEIIESLDAS* >Glyma13g25700.4 sequence type=predicted peptide gene model=Glyma13g25700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MERWSGVLRVPLHPNSRTFHRVGASLCLSPETRTLLVPKANAIFFCGDRVEGTGNPVIERLSNLQKLSEIIVSKFGSFTNAWVIEASAFNGPFAVYKDFIPSVNQYGEPSSYHPNGFPASTSTVSLLSNCLEEAKKVILGTQVDTKSGLSPSCSFSRSKTFILGFSKGGAVLNQIVTELGFSDIGSNANSPDVGQLMGRKFAGSEEIYVVPKTKEDLLNSISEIHYVDVGLNSAGAYLTNHDVFERISKRLMQGASELRFILHGTPRQWSDKRRDWIRNEKDKMLRLLESEAPKSGGKLKVLERFYFTDKPPSMQMHFEIIESLDAS*
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