SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G02090 | AT | Annotation by Michelle Graham. TAIR10: Proteasome component (PCI) domain protein | chr1:387479-389568 REVERSE LENGTH=260 | SoyBase | E_val: 2.00E-145 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0010387 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signalosome assembly | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
| GO:0016579 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein deubiquitination | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0008180 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: signalosome | SoyBase | N/A | ISS |
| GO:0004708 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: MAP kinase kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG3250 | KOG | COP9 signalosome, subunit CSN7 | JGI | ISS | |
| PTHR15350 | Panther | COP9 COMPLEX SUBUNIT 7A | JGI | ISS | |
| PF01399 | PFAM | PCI domain | JGI | ISS | |
| UniRef100_I1M0I7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0I7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q94JU3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: COP9 signalosome complex subunit 7 n=1 Tax=Arabidopsis thaliana RepID=CSN7_ARATH | SoyBase | E_val: 1.00E-142 | ISS |
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Glyma13g25690 not represented in the dataset |
Glyma13g25690 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g187200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g25690.2 sequence type=transcript gene model=Glyma13g25690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCCTGAACAGAACGAACATCAGTTTCTCTTCTGAGACCCTTCATTCACCTATCAGAGACAAAGCGCTCTCTCTCCAAAAAAAAAAAAAACTCGCTAAATTACAAAAATCTCTTCAAATCCTCTCAACCGAAACCCTAATCATAAAACCCTAGATTTTACTTTATTTGTTTCCCTCAATCGAATCGATTTTCCCCTTCCGAAAACCCTAATTCCTTCCTCGCTATCGAAGATGGACATCGAGCAGAAGCAATCGGAGCTCATAGACCACTTCGTCAAGCGTGCCTCCGCGGCCTCCGACGCCGCTGCACTATCCTCCGTTCTCGTCGAAGCCACTTCTCACCCTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAGCTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCACATGGAACATGGAATGATTACAAGAGTAATGCTGACCGTCTTCCACAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTTACAGTTCTTACACTGGCTGAGACATATAAGGTACTACCCTATGACCAACTGATGCAGGAGTTAGATGTGACAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCGGGAATAGTTCGAGGAAAGTTGGATCAGTTGCGGCGGTGCTTTGAGGTCCAATTTGCAGCTGGTAGGGACTTGAGGCCTGATCAACTAGGGAATATGATACAGACTCTCTCTAACTGGTTGTCTACATCAGAAAATATGCTTGTTTCAATTCAAGAGAAGATAAAATGGGCTGATGCAATGAGTGAAATTGACAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTAGAAGAAGTAAAGAAGTCCATTTTCAAGAAGTTACACACTGTAAGCAGGCCGACATCGACTTCAGAGGGCATGAGGAGATCTGCTCTGAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGACCAAAGAGGAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGAGATGGGTTCTTTAGTTGCTTGCCTGACTTTTATTCATGGCATGCGTCAACAGAGGATATCAGCTTTTGCAGACAGACAAGTATATCTCATCGATATTGCCCTTGTCTGTCACACCACAAAGCGAGATAGGGACAAGGAAAAAAAGGAGGGAAAACCTGTTAATTTAGGAAATTGATAGTGTTTCTTGAACCATTATTTAATCGTCTACTGAGTTGGCAATAACAAGCTGAGATGGTGGTGCGGCTATTTATTTGCGGTTGCTGAATGCTATATATACTGTTTTGTTTTGTATTATGCTGATATATTTGCTGCCTCAATTGCGTTGTTATACTTTGTGGTGAATATATATATTCCAAAATTATATATTAGATGCGTATTCTTGATAGTATCAATTGTTGACACTGTTAAAAAAAATGAAAAATTTAATTTAATTTCAAATGCAAAA
>Glyma13g25690.1 sequence type=CDS gene model=Glyma13g25690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACATCGAGCAGAAGCAATCGGAGCTCATAGACCACTTCGTCAAGCGTGCCTCCGCGGCCTCCGACGCCGCTGCACTATCCTCCGTTCTCGTCGAAGCCACTTCTCACCCTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAGCTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCACATGGAACATGGAATGATTACAAGAGTAATGCTGACCGTCTTCCACAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTTACAGTTCTTACACTGGCTGAGACATATAAGGTACTACCCTATGACCAACTGATGCAGGAGTTAGATGTGACAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCGGGAATAGTTCGAGGAAAGTTGGATCAGTTGCGGCGGTGCTTTGAGGTCCAATTTGCAGCTGGTAGGGACTTGAGGCCTGATCAACTAGGGAATATGATACAGACTCTCTCTAACTGGTTGTCTACATCAGAAAATATGCTTGTTTCAATTCAAGAGAAGATAAAATGGGCTGATGCAATGAGTGAAATTGACAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTAGAAGAAGTAAAGAAGTCCATTTTCAAGGCCGACATCGACTTCAGAGGGCATGAGGAGATCTGCTCTGAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGACCAAAGAGGAGGCGGCATCCAATTTCTTGA >Glyma13g25690.2 sequence type=CDS gene model=Glyma13g25690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACATCGAGCAGAAGCAATCGGAGCTCATAGACCACTTCGTCAAGCGTGCCTCCGCGGCCTCCGACGCCGCTGCACTATCCTCCGTTCTCGTCGAAGCCACTTCTCACCCTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAGCTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCACATGGAACATGGAATGATTACAAGAGTAATGCTGACCGTCTTCCACAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTTACAGTTCTTACACTGGCTGAGACATATAAGGTACTACCCTATGACCAACTGATGCAGGAGTTAGATGTGACAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCGGGAATAGTTCGAGGAAAGTTGGATCAGTTGCGGCGGTGCTTTGAGGTCCAATTTGCAGCTGGTAGGGACTTGAGGCCTGATCAACTAGGGAATATGATACAGACTCTCTCTAACTGGTTGTCTACATCAGAAAATATGCTTGTTTCAATTCAAGAGAAGATAAAATGGGCTGATGCAATGAGTGAAATTGACAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTAGAAGAAGTAAAGAAGTCCATTTTCAAGAAGTTACACACTGTAAGCAGGCCGACATCGACTTCAGAGGGCATGAGGAGATCTGCTCTGAATCTGGTGGAGTGA
>Glyma13g25690.1 sequence type=predicted peptide gene model=Glyma13g25690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDIEQKQSELIDHFVKRASAASDAAALSSVLVEATSHPSLFAFSEILALPNLLQLEATENSAYLDMLRLFAHGTWNDYKSNADRLPQLIPDQILKLKQLTVLTLAETYKVLPYDQLMQELDVTNVRELEDFLINECMYAGIVRGKLDQLRRCFEVQFAAGRDLRPDQLGNMIQTLSNWLSTSENMLVSIQEKIKWADAMSEIDKKHRKDVEEKVEEVKKSIFKADIDFRGHEEICSESGGVMDYEEDRSRPKRRRHPIS* >Glyma13g25690.2 sequence type=predicted peptide gene model=Glyma13g25690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDIEQKQSELIDHFVKRASAASDAAALSSVLVEATSHPSLFAFSEILALPNLLQLEATENSAYLDMLRLFAHGTWNDYKSNADRLPQLIPDQILKLKQLTVLTLAETYKVLPYDQLMQELDVTNVRELEDFLINECMYAGIVRGKLDQLRRCFEVQFAAGRDLRPDQLGNMIQTLSNWLSTSENMLVSIQEKIKWADAMSEIDKKHRKDVEEKVEEVKKSIFKKLHTVSRPTSTSEGMRRSALNLVE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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