Glyma13g25600 - SoyBase

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Report for Sequence Feature Glyma13g25600

Feature Type:	gene_model
Chromosome:	Gm13
Start:	28816714
stop:	28825759
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g25600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13750	AT	Annotation by Michelle Graham. TAIR10: zinc induced facilitator-like 1 \| chr5:4438318-4441289 FORWARD LENGTH=478	SoyBase	E_val: 0	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG2615	KOG	Permease of the major facilitator superfamily	JGI		ISS
PTHR24003	Panther	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PR	JGI		ISS
PTHR24003:SF14	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07690	PFAM	Major Facilitator Superfamily	JGI		ISS
UniRef100_G7J342	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Membrane protein, putative n=1 Tax=Medicago truncatula RepID=G7J342_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M0H9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M0H9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g25600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g25600 not represented in the dataset	Glyma13g25600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g25600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g186500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g25600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g25600

Limit To All Plant Sequences

>Glyma13g25600.3   sequence type=transcript   gene model=Glyma13g25600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTTCTTTTATAACTTTAAACCAAACATATCCTTTAAATTTTTTTTATAAACCTTTTCCCCACTTTATCTTTTTCCCCATTAGCCACTTTTCACTGTCATGCAATGTGTATATGCAAGGATGCAATGATGGCACTCGTTAACATTATCCACGTTAGTCTACACTTGTGGCCATTAAAATAAAGAGCATTTGTAACGTGTCTTGATATAACATGTGAGAGTGACAAGACCTTGCGTTGTTCGTGTTCATTTTTTCATTCTCAAACCCAGGATAGGACCGAGTCCAAGAGTTTCTTCTTCGGTTGTGTGAATTAGAGGGACCTGAGTGAAACAAGTGTGGCGGAGTTCTCTAACAAACATGACAGAGAAGAATGGCAAACAACCATTGTTGGAGAGGAAGTACTACGAGGACTGCCCAGGTTGTAAAGTGGATCAAGCCAAAGAGTTGAGTAAGGGACAAGGTGTATCCTTTACAAATCTTTTTATCATATGGGTGGTGGTGCTGTGTGCCGCACTGCCAATATCATCGCTCTATCCATTCCTTTATTTCATGGTAAGGGATTTTAATATTGCGAAAACAGAAGCTGATATTAGTTCTTATGCTGGTTATGTGGGTTCTGCATTCATGCTTGGCAGATGTTTGACATCTTTGTTGTGGGGAACTATAGCTGATCGCTTTGGTCGAAAACCTGTTTTTGTTATAGGAATTATTGCAGTTGTCATTTTCAACACACTATTTGGCCTTAGCACAAGTTTTTGGATGGCTGTTATCATGAGGTTTCTTATGGGAAGTTTAAATGGTTTGCTTGGAACAGCGAAGGCGTATGCCACTGAAATATTTCGAGAAGAACACCAAGCTCTAGGACTCTCAACTGTCAGTGCAGCTTGGGGCATAGGTTTAATCATTGGCCCAGCATTGGGAGGCTATTTGGCTCAGCCAGTGGAGAAGTACCCACATATATTTCCAAAAGATTCCTTTTGGGATAAGTTTCCATACTTCTTGCCCAACTTTGTAGTATCAGCACTTGCATTTGTAGTAGCTATTGGCTGCATCTGGATTCCGGAAACACTTCACAACCACAATTGTAGCAATGAATCCATAGACGATGCTGAAAATGGAAGTAGTGGGGCTGGCAATGAAAAGACAATTCAAAAGAATGAAAACCTCCTCCTGAATTGGCCCTTAATGTCCTCTATCATCGCTTATTGTGTTTTCTCACTTCATGATATTACTTATACAGAGGTTTTCTCGTTGTGGTCTGTTAGTCCTCAAAGGATGGGGGGTTTGAACTTTACAAGTGATGATGTTGGTAATATTCTTTCAATATCAGGTGTTGCACTTATCATTTACCAACTTACCTTATACCCATCTGTGGAAAAAGCTAGTGGACCTATTGGTATTGCCCGCATCTCAGCGATGTTATCCATACCTCTTCTACAAAGCTACTCCTTCATAGCATTGTTGTCAGGCTTGGCACTATACATAGTGTTAAGTATTGCTTCAATTCTGAAGAATATTCTGTCTATCACCATTGTAACTGGTTTGTTCCTACTACAAAACCGAGCAGTGGAACAACACCAAAGAGGGGTAGCTAATGGCATTGCTGTGACAGGCATGTCTCTATTCAATGCTATTGGCCCTGCTGCAGGTGGTGCTGTATTAACTTGGTCACAAAAGCGAATGGATGCTTCATTTCTCCCAGGCACCCATATGGTCTTCTTTGCCTTGAACATAGTTGAAGCACTTGGATTATTGATGTTGTTCAAACCATTCCTTGCTGAAAAGAAGAAAAGGCACTCAGATCAGTTACACTGATGCCTATCAGTTTTGCTTAGGCATATGTAGCATCTCTTTGAGCTATTGTTATTTCTTGCCTATTATTTGGGACAGCGATGGTAGCTTGCTGCATTGAGTATGTTATCATGCGGACTAATTATTATTAAAGCTAAATAGGTGGTACCAATTCAATTTGTAACTCCAAAAAAATAAAAGCTAAAATATTGATCCTTTTTTCTTCCCCTCTGCAGCCTCACAGT

>Glyma13g25600.4   sequence type=transcript   gene model=Glyma13g25600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGGGGAGAATTAAAGTTCAATGCTAAAATGTTACAAGGGATTTTCTATTTTAATATTTTGATTGGAAAATCAGTGTTTGATTTTGTGTCTTACTAGTTTTCATTTTTTTGAAATTCTTAATTAGTTGAAATAATCTTGGAACTAAAACTACTTTTTCATATCTGATTTCACTTTATTTTTTCCTGTACAGCACTGCCAATATCATCGCTCTATCCATTCCTTTATTTCATGGTAAGGGATTTTAATATTGCGAAAACAGAAGCTGATATTAGTTCTTATGCTGGTTATGTGGGTTCTGCATTCATGCTTGGCAGATGTTTGACATCTTTGTTGTGGGGAACTATAGCTGATCGCTTTGGTCGAAAACCTGTTTTTGTTATAGGAATTATTGCAGTTGTCATTTTCAACACACTATTTGGCCTTAGCACAAGTTTTTGGATGGCTGTTATCATGAGGTTTCTTATGGGAAGTTTAAATGGTTTGCTTGGAACAGCGAAGGCGTATGCCACTGAAATATTTCGAGAAGAACACCAAGCTCTAGGACTCTCAACTGTCAGTGCAGCTTGGGGCATAGGTTTAATCATTGGCCCAGCATTGGGAGGCTATTTGGCTCAGCCAGTGGAGAAGTACCCACATATATTTCCAAAAGATTCCTTTTGGGATAAGTTTCCATACTTCTTGCCCAACTTTGTAGTATCAGCACTTGCATTTGTAGTAGCTATTGGCTGCATCTGGATTCCGGAAACACTTCACAACCACAATTGTAGCAATGAATCCATAGACGATGCTGAAAATGGAAGTAGTGGGGCTGGCAATGAAAAGACAATTCAAAAGAATGAAAACCTCCTCCTGAATTGGCCCTTAATGTCCTCTATCATCGCTTATTGTGTTTTCTCACTTCATGATATTACTTATACAGAGGTTTTCTCGTTGTGGTCTGTTAGTCCTCAAAGGATGGGGGGTTTGAACTTTACAAGTGATGATGTTGGTAATATTCTTTCAATATCAGGTGTTGCACTTATCATTTACCAACTTACCTTATACCCATCTGTGGAAAAAGCTAGTGGACCTATTGGTATTGCCCGCATCTCAGCGATGTTATCCATACCTCTTCTACAAAGCTACTCCTTCATAGCATTGTTGTCAGGCTTGGCACTATACATAGTGTTAAGTATTGCTTCAATTCTGAAGAATATTCTGTCTATCACCATTGTAACTGGTTTGTTCCTACTACAAAACCGAGCAGTGGAACAACACCAAAGAGGGGTAGCTAATGGCATTGCTGTGACAGGCATGTCTCTATTCAATGCTATTGGCCCTGCTGCAGGTGGTGCTGTATTAACTTGGTCACAAAAGCGAATGGATGCTTCATTTCTCCCAGGCACCCATATGGTCTTCTTTGCCTTGAACATAGTTGAAGCACTTGGATTATTGATGTTGTTCAAACCATTCCTTGCTGAAAAGAAGAAAAGGCACTCAGATCAGTTACACTGATGCCTATCAGTTTTGCTTAGGCATATGTAGCATCTCTTTGAGCTATTGTTATTTCTTGCCTATTATTTGGGACAGCGATGGTAGCTTGCTGCATTGAGTATGTTATCATGCGGACTAATTATTATTAAAGCTAAATAGGTGGTACCAATTCAATTTGTAACTCCAAAAAAATAAAAGCTAAAATATTGATCCTTTTTTCTTCCCCTCTGCAGCCTCACAGT

Coding sequences of Glyma13g25600

Limit To All Plant Sequences

>Glyma13g25600.1   sequence type=CDS   gene model=Glyma13g25600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGAGAAGAATGGCAAACAACCATTGTTGGAGAGGAAGTACTACGAGGACTGCCCAGGTTGTAAAGTGGATCAAGCCAAAGAGTTGAGTAAGGGACAAGGTGTATCCTTTACAAATCTTTTTATCATATGGGTGGTGGTGCTGTGTGCCGCACTGCCAATATCATCGCTCTATCCATTCCTTTATTTCATGGTAAGGGATTTTAATATTGCGAAAACAGAAGCTGATATTAGTTCTTATGCTGGTTATGTGGGTTCTGCATTCATGCTTGGCAGATGTTTGACATCTTTGTTGTGGGGAACTATAGCTGATCGCTTTGGTCGAAAACCTGTTTTTGTTATAGGAATTATTGCAGTTGTCATTTTCAACACACTATTTGGCCTTAGCACAAGTTTTTGGATGGCTGTTATCATGAGGTTTCTTATGGGAAGTTTAAATGGTTTGCTTGGAACAGCGAAGGCGTATGCCACTGAAATATTTCGAGAAGAACACCAAGCTCTAGGACTCTCAACTGTCAGTGCAGCTTGGGGCATAGGTTTAATCATTGGCCCAGCATTGGGAGGCTATTTGGCTCAGCCAGTGGAGAAGTACCCACATATATTTCCAAAAGATTCCTTTTGGGATAAGTTTCCATACTTCTTGCCCAACTTTGTAGTATCAGCACTTGCATTTGTAGTAGCTATTGGCTGCATCTGGATTCCGGAAACACTTCACAACCACAATTGTAGCAATGAATCCATAGACGATGCTGAAAATGGAAGTAGTGGGGCTGGCAATGAAAAGACAATTCAAAAGAATGAAAACCTCCTCCTGAATTGGCCCTTAATGTCCTCTATCATCGCTTATTGTGTTTTCTCACTTCATGATATTACTTATACAGAGGTTTTCTCGTTGTGGTCTGTTAGTCCTCAAAGGATGGGGGGTTTGAACTTTACAAGTGATGATGTTGGTAATATTCTTTCAATATCAGGTGTTGCACTTATCATTTACCAACTTACCTTATACCCATCTGTGGAAAAAGCTAGTGGACCTATTGGTATTGCCCGCATCTCAGCGATGTTATCCATACCTCTTCTACAAAGCTACTCCTTCATAGCATTGTTGTCAGGCTTGGCACTATACATAGTGTTAAGTATTGCTTCAATTCTGAAGAATATTCTGTCTATCACCATTGTAACTGGTTTGTTCCTACTACAAAACCGAGCAGTGGAACAACACCAAAGAGGGGTAGCTAATGGCATTGCTGTGACAGGCATGTCTCTATTCAATGCTATTGGCCCTGCTGCAGGTGGTGCTGTATTAACTTGGTCACAAAAGCGAATGGATGCTTCATTTCTCCCAGGCACCCATATGGTCTTCTTTGCCTTGAACATAGTTGAAGCACTTGGATTATTGATGTTGTTCAAACCATTCCTTGCTGAAAAGAAGAAAAGGCACTCAGATCAGTTACACTGA

>Glyma13g25600.3   sequence type=CDS   gene model=Glyma13g25600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGAGAAGAATGGCAAACAACCATTGTTGGAGAGGAAGTACTACGAGGACTGCCCAGGTTGTAAAGTGGATCAAGCCAAAGAGTTGAGTAAGGGACAAGGTGTATCCTTTACAAATCTTTTTATCATATGGGTGGTGGTGCTGTGTGCCGCACTGCCAATATCATCGCTCTATCCATTCCTTTATTTCATGGTAAGGGATTTTAATATTGCGAAAACAGAAGCTGATATTAGTTCTTATGCTGGTTATGTGGGTTCTGCATTCATGCTTGGCAGATGTTTGACATCTTTGTTGTGGGGAACTATAGCTGATCGCTTTGGTCGAAAACCTGTTTTTGTTATAGGAATTATTGCAGTTGTCATTTTCAACACACTATTTGGCCTTAGCACAAGTTTTTGGATGGCTGTTATCATGAGGTTTCTTATGGGAAGTTTAAATGGTTTGCTTGGAACAGCGAAGGCGTATGCCACTGAAATATTTCGAGAAGAACACCAAGCTCTAGGACTCTCAACTGTCAGTGCAGCTTGGGGCATAGGTTTAATCATTGGCCCAGCATTGGGAGGCTATTTGGCTCAGCCAGTGGAGAAGTACCCACATATATTTCCAAAAGATTCCTTTTGGGATAAGTTTCCATACTTCTTGCCCAACTTTGTAGTATCAGCACTTGCATTTGTAGTAGCTATTGGCTGCATCTGGATTCCGGAAACACTTCACAACCACAATTGTAGCAATGAATCCATAGACGATGCTGAAAATGGAAGTAGTGGGGCTGGCAATGAAAAGACAATTCAAAAGAATGAAAACCTCCTCCTGAATTGGCCCTTAATGTCCTCTATCATCGCTTATTGTGTTTTCTCACTTCATGATATTACTTATACAGAGGTTTTCTCGTTGTGGTCTGTTAGTCCTCAAAGGATGGGGGGTTTGAACTTTACAAGTGATGATGTTGGTAATATTCTTTCAATATCAGGTGTTGCACTTATCATTTACCAACTTACCTTATACCCATCTGTGGAAAAAGCTAGTGGACCTATTGGTATTGCCCGCATCTCAGCGATGTTATCCATACCTCTTCTACAAAGCTACTCCTTCATAGCATTGTTGTCAGGCTTGGCACTATACATAGTGTTAAGTATTGCTTCAATTCTGAAGAATATTCTGTCTATCACCATTGTAACTGGTTTGTTCCTACTACAAAACCGAGCAGTGGAACAACACCAAAGAGGGGTAGCTAATGGCATTGCTGTGACAGGCATGTCTCTATTCAATGCTATTGGCCCTGCTGCAGGTGGTGCTGTATTAACTTGGTCACAAAAGCGAATGGATGCTTCATTTCTCCCAGGCACCCATATGGTCTTCTTTGCCTTGAACATAGTTGAAGCACTTGGATTATTGATGTTGTTCAAACCATTCCTTGCTGAAAAGAAGAAAAGGCACTCAGATCAGTTACACTGA

>Glyma13g25600.4   sequence type=CDS   gene model=Glyma13g25600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAGGGATTTTAATATTGCGAAAACAGAAGCTGATATTAGTTCTTATGCTGGTTATGTGGGTTCTGCATTCATGCTTGGCAGATGTTTGACATCTTTGTTGTGGGGAACTATAGCTGATCGCTTTGGTCGAAAACCTGTTTTTGTTATAGGAATTATTGCAGTTGTCATTTTCAACACACTATTTGGCCTTAGCACAAGTTTTTGGATGGCTGTTATCATGAGGTTTCTTATGGGAAGTTTAAATGGTTTGCTTGGAACAGCGAAGGCGTATGCCACTGAAATATTTCGAGAAGAACACCAAGCTCTAGGACTCTCAACTGTCAGTGCAGCTTGGGGCATAGGTTTAATCATTGGCCCAGCATTGGGAGGCTATTTGGCTCAGCCAGTGGAGAAGTACCCACATATATTTCCAAAAGATTCCTTTTGGGATAAGTTTCCATACTTCTTGCCCAACTTTGTAGTATCAGCACTTGCATTTGTAGTAGCTATTGGCTGCATCTGGATTCCGGAAACACTTCACAACCACAATTGTAGCAATGAATCCATAGACGATGCTGAAAATGGAAGTAGTGGGGCTGGCAATGAAAAGACAATTCAAAAGAATGAAAACCTCCTCCTGAATTGGCCCTTAATGTCCTCTATCATCGCTTATTGTGTTTTCTCACTTCATGATATTACTTATACAGAGGTTTTCTCGTTGTGGTCTGTTAGTCCTCAAAGGATGGGGGGTTTGAACTTTACAAGTGATGATGTTGGTAATATTCTTTCAATATCAGGTGTTGCACTTATCATTTACCAACTTACCTTATACCCATCTGTGGAAAAAGCTAGTGGACCTATTGGTATTGCCCGCATCTCAGCGATGTTATCCATACCTCTTCTACAAAGCTACTCCTTCATAGCATTGTTGTCAGGCTTGGCACTATACATAGTGTTAAGTATTGCTTCAATTCTGAAGAATATTCTGTCTATCACCATTGTAACTGGTTTGTTCCTACTACAAAACCGAGCAGTGGAACAACACCAAAGAGGGGTAGCTAATGGCATTGCTGTGACAGGCATGTCTCTATTCAATGCTATTGGCCCTGCTGCAGGTGGTGCTGTATTAACTTGGTCACAAAAGCGAATGGATGCTTCATTTCTCCCAGGCACCCATATGGTCTTCTTTGCCTTGAACATAGTTGAAGCACTTGGATTATTGATGTTGTTCAAACCATTCCTTGCTGAAAAGAAGAAAAGGCACTCAGATCAGTTACACTGA

Predicted protein sequences of Glyma13g25600

Limit To All Plant Sequences

>Glyma13g25600.1   sequence type=predicted peptide   gene model=Glyma13g25600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEKNGKQPLLERKYYEDCPGCKVDQAKELSKGQGVSFTNLFIIWVVVLCAALPISSLYPFLYFMVRDFNIAKTEADISSYAGYVGSAFMLGRCLTSLLWGTIADRFGRKPVFVIGIIAVVIFNTLFGLSTSFWMAVIMRFLMGSLNGLLGTAKAYATEIFREEHQALGLSTVSAAWGIGLIIGPALGGYLAQPVEKYPHIFPKDSFWDKFPYFLPNFVVSALAFVVAIGCIWIPETLHNHNCSNESIDDAENGSSGAGNEKTIQKNENLLLNWPLMSSIIAYCVFSLHDITYTEVFSLWSVSPQRMGGLNFTSDDVGNILSISGVALIIYQLTLYPSVEKASGPIGIARISAMLSIPLLQSYSFIALLSGLALYIVLSIASILKNILSITIVTGLFLLQNRAVEQHQRGVANGIAVTGMSLFNAIGPAAGGAVLTWSQKRMDASFLPGTHMVFFALNIVEALGLLMLFKPFLAEKKKRHSDQLH*

>Glyma13g25600.3   sequence type=predicted peptide   gene model=Glyma13g25600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEKNGKQPLLERKYYEDCPGCKVDQAKELSKGQGVSFTNLFIIWVVVLCAALPISSLYPFLYFMVRDFNIAKTEADISSYAGYVGSAFMLGRCLTSLLWGTIADRFGRKPVFVIGIIAVVIFNTLFGLSTSFWMAVIMRFLMGSLNGLLGTAKAYATEIFREEHQALGLSTVSAAWGIGLIIGPALGGYLAQPVEKYPHIFPKDSFWDKFPYFLPNFVVSALAFVVAIGCIWIPETLHNHNCSNESIDDAENGSSGAGNEKTIQKNENLLLNWPLMSSIIAYCVFSLHDITYTEVFSLWSVSPQRMGGLNFTSDDVGNILSISGVALIIYQLTLYPSVEKASGPIGIARISAMLSIPLLQSYSFIALLSGLALYIVLSIASILKNILSITIVTGLFLLQNRAVEQHQRGVANGIAVTGMSLFNAIGPAAGGAVLTWSQKRMDASFLPGTHMVFFALNIVEALGLLMLFKPFLAEKKKRHSDQLH*

>Glyma13g25600.4   sequence type=predicted peptide   gene model=Glyma13g25600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRDFNIAKTEADISSYAGYVGSAFMLGRCLTSLLWGTIADRFGRKPVFVIGIIAVVIFNTLFGLSTSFWMAVIMRFLMGSLNGLLGTAKAYATEIFREEHQALGLSTVSAAWGIGLIIGPALGGYLAQPVEKYPHIFPKDSFWDKFPYFLPNFVVSALAFVVAIGCIWIPETLHNHNCSNESIDDAENGSSGAGNEKTIQKNENLLLNWPLMSSIIAYCVFSLHDITYTEVFSLWSVSPQRMGGLNFTSDDVGNILSISGVALIIYQLTLYPSVEKASGPIGIARISAMLSIPLLQSYSFIALLSGLALYIVLSIASILKNILSITIVTGLFLLQNRAVEQHQRGVANGIAVTGMSLFNAIGPAAGGAVLTWSQKRMDASFLPGTHMVFFALNIVEALGLLMLFKPFLAEKKKRHSDQLH*

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