Glyma13g25580 - SoyBase

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Report for Sequence Feature Glyma13g25580

Feature Type:	gene_model
Chromosome:	Gm13
Start:	28795696
stop:	28799858
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g25580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25330	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 21 Blast hits to 21 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr4:12957834-12958683 FORWARD LENGTH=229	SoyBase	E_val: 1.00E-31	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0042991	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription factor import into nucleus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1M0H3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0H3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g25580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g25580

Paralog	Evidence	Comments
Glyma15g35415	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g25580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g186300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g25580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g25580

Limit To All Plant Sequences

>Glyma13g25580.1   sequence type=CDS   gene model=Glyma13g25580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGAAACCGCTGTTGGCGGAGAGCGATTACTACTACAGGGTGGAGTTCAGAGCGTGCAAGGACGACGCGTGGTACGCGACGCGCGTTTCGCTGGAGGGAGAAACACTGAAAGTGAAGTACTTCAACTTCCCCGACGAATACGACAACGCGTTTCGAGCCTCCGAGTTTGGGGACTTGGAAAAGCTTCAGGAGTTTGGGGAACGCTTCAGAACCCTCTCCAAACAGGCTCAGGACAGCGATTGTCGTTCACTCGCTGAGGGTGTCTGGGTCTGCGCGTGTCAGTGTTTCGGCGATGATGATCTTCGCTACTACGACGCTGTCGTCGACGGGGTGCAACATGGAAAGCATTATTGGAAAGCAGGAAAGGAAACATGCTTTTGCACCTTCATACTTTTCTGGTTACAAGGGCCAAATGCGGGAAATTTGACTGCTACAACAATTCAGGATATCTGCATGGTTCAGCTTGAACGGCAGCTAGATCCTGTAGTGGCTTCATTTCTAGAGATGGCAAGGAGGAAAATAGAACGACCAGCAAAGGAAAAACAATGTGCTAATCAGTCTGTTGTCAAATTTTGTTCACCTGAAGTTAGTTGTCATGACAGGGAAGATAGGGTTATTGAAGGAACAAAAAAAAATATGTGTATGATATTGATTGCCAATATCGGTAGAGAGTTATGTCCATCAGCAATTACAGAGTTCTTACATAGACATACTTCAGTATCGGCTAGTGTCTTCATTTTTCCGAATTTGGCATCGGAGGTATATTCCAGGGGAGCCATTATGTTGGATTCTGAAAAAGAGTTCCAAAAGCTGTGTGACTTTTTGAATAATCCCAACTGCATCGTAATATCTTCAACTGAAAGGCCATGGGTAGTACTTGAAAAGCTAGTGGGGCTCAAAAAAATTAAAGCATCAATAGGAAGATTTGTGAATACATCAACGAATATATTACAAAAAGGAAAGAGTGGAAGGAGCGACAGTTTGAAGGTTGTATACTCAGGAACTCAAGAATTCAAGATAGCTAGTGACATGAGGGATTTGTTTTTGGAATTTTTTAATCACCAAGAGCGGCTACACAAGAGGCTTGCCCTTGAGGAGAGAAGGGTATGTAACTAA

Predicted protein sequences of Glyma13g25580

Limit To All Plant Sequences

>Glyma13g25580.1   sequence type=predicted peptide   gene model=Glyma13g25580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKKPLLAESDYYYRVEFRACKDDAWYATRVSLEGETLKVKYFNFPDEYDNAFRASEFGDLEKLQEFGERFRTLSKQAQDSDCRSLAEGVWVCACQCFGDDDLRYYDAVVDGVQHGKHYWKAGKETCFCTFILFWLQGPNAGNLTATTIQDICMVQLERQLDPVVASFLEMARRKIERPAKEKQCANQSVVKFCSPEVSCHDREDRVIEGTKKNMCMILIANIGRELCPSAITEFLHRHTSVSASVFIFPNLASEVYSRGAIMLDSEKEFQKLCDFLNNPNCIVISSTERPWVVLEKLVGLKKIKASIGRFVNTSTNILQKGKSGRSDSLKVVYSGTQEFKIASDMRDLFLEFFNHQERLHKRLALEERRVCN*

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