Glyma13g25440 - SoyBase

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Report for Sequence Feature Glyma13g25440

Feature Type:	gene_model
Chromosome:	Gm13
Start:	28671432
stop:	28677013
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g25440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14470	AT	Annotation by Michelle Graham. TAIR10: NB-ARC domain-containing disease resistance protein \| chr3:4857940-4861104 FORWARD LENGTH=1054	SoyBase	E_val: 0	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043531	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP binding	SoyBase	N/A	ISS
KOG4658	KOG	Apoptotic ATPase	JGI		ISS
PTHR23155	Panther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	JGI		ISS
PTHR23155:SF121	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00931	PFAM	NB-ARC domain	JGI		ISS
UniRef100_I1M0G2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0G2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6SQJ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NBS-LRR type disease resistance protein RPG1-B n=1 Tax=Glycine max RepID=Q6SQJ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g25440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g25440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g184900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g25440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g25440

Limit To All Plant Sequences

>Glyma13g25440.2   sequence type=CDS   gene model=Glyma13g25440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTAGAATTGGTTGGTGGTGCTCTTCTTAATGCTTTCCTTCAGGTTGCATTTGAGAAGCTTGCTTCTCATCTAGTTCGGGACTTCTTTCGTGGAAGAAAGCTTGATCAAAAGCTGCTCAACAACTTGGAAATCAAGCTGAACTCCATACAGGCTCTGGCTAATGATGCAGAACTAAAGCAGTTCAGAGATCCACTTGTCAGAAACTGGCTTCTTAAGGTCAAAGATGCTGTGTTTGACGCAGAGGATATCTTGGATGAAATACAACATGAGATCTCCAAATGCCAGGTCGAAGCTGAAGCTGAAGCTGAGTCTCAAACCTGCACTTGCAAGGTACCAAATTTCTTCAAATCTTCTCCTGCTAGTTCCTTTAACAGGGAAATTAAATCCAGGATGGAAGAAATCCTTGATAGATTAGAACTTCTCTCAAGCCAAAAGGATGATCTAGGCTTGAAAAATGCTAGTGGTGTTGGGGTTGGATCAGAATTGGGTTGTGCAGTACCACAGATATCACAATCAACATCTTCAGTTGTTGAAAGTGATATTTATGGCAGAGATGAAGACAAAAAAATGATTTTTGATTGGCTGACATCTGACAACGGCAATCCTAACCAGCCATCGATACTTTCTATTGTGGGCATGGGTGGGATGGGTAAGACCACACTTGCTCAACTTGTATTCAATGACCCTAGGATCGAGGAGGCTAGATTTGATGTCAAAGCTTGGGTCTGTGTTTCAGATGATTTTGATGCTTTCAGGGTAACAAGAACAATTCTTGAGGCCATCACTAAATCGACTGATGATAGTAGAGACCTAGAGATGGTTCACGGAAGATTGAAAGAAAAATTGACGGGGAAGAGATTTCTTCTTGTTTTGGATGACGTTTGGAACGAAAACCGACTTAAATGGGAAGCTGTGCTAAAACATCTTGTTTTTGGGGCTCAGGGGAGTAGAATTATTGCCACCACACGTAGTAAGGAAGTTGCTTCTACCATGAGGTCAGAAGAACACCTCCTGGAGCAATTACAAGAAGATCATTGCTGGAAGTTGTTTGCTAAACATGCATTCCAAGATGATAATATTCAACCAAATCCAGATTGCAAGGAGATTGGTATGAAGATAGTTGAAAAATGTAAAGGACTTCCTCTGGCCTTGAAAACAATGGGAAGTCTATTACACAACAAGTCATCTGTTACGGAATGGAAAAGCATATTGCAGAGCGAGATATGGGAATTTTCAATAGAGCGTAGTGATATTGTACCTGCTTTAGCACTAAGCTATCACCATCTTCCTTCTCATCTCAAGAGATGTTTTGCTTATTGTGCCTTATTCCCCAAAGATTATGAGTTTGATAAGGAGTGCTTAATACAATTGTGGATGGCTGAAAAATTTCTACAATGTTCTCAACAGGGTAAGAGTCCAGAAGAAGTTGGTGAACAATACTTCAATGATCTATTATCAAGGTGCTTCTTTCAACAATCAAGCAACACAGAGAGAACAGATTTTGTCATGCATGACCTTCTCAACGATTTGGCAAGATTTATTTGTGGGGACATTTGTTTCAGATTGGATGGGAATCAAACAAAAGGTACACCAAAAGCAACCCGTCATTTTTTAATTGACGTTAAATGTTTTGATGGGTTTGGAACTCTATGTGACACAAAAAAGTTACGTACTTATATGCCAACAAGTGACAAATATTGGGATTGCGAGATGTCAATACATGAATTGTTCTCCAAGTTTAATTACTTACGTGTCTTATCTCTGTCTGTTTGTCATGACCTAAGAGAGGTGCCTGACTCTGTGGGTAATCTCAAATATCTCCGTTCCTTAGACTTATCCAATACTGGAATAGAAAAACTACCTGAATCAATATGTTCACTCTACAACTTGCAAATACTGAAGCTAAATGGTTGTGAACATTTGAAGGAGCTGCCCTCAAATTTGCATAAACTCACTGATTTGCATCGCCTTGAATTAATGTATACTGGAGTGAGAAAGGTACCAGCACATTTGGGAAAACTGGAGTATCTTCAAGTATTAATGAGTTCGTTTAATGTTGGCAAAAGTAGGGAGTTCAGTATCCAGCAGCTAGGAGAACTCAATCTTCATGGAAGTCTATCAATTGAGAACCTGCAGAATGTTGAGAATCCCTCAGATGCATTGGCAGTGGATTTAAAAAATAAAACACACCTTGTCGAGCTAGAGTTAGAATGGGATTCAGACTGGAACCCCAATGATTCAATGAAAAAAAGAGATGAAATTGTAATCGAGAATCTACAGCCTTCCAAACACTTGGAGAAGTTGAAGATCAGGAACTATGGGGGTAAACAATTTCCAAGGTGGTTATTCAACAATTCATTATTGAATGTGGTGTCCTTAACCTTGGAGAACTGTCGATCTTGCCAACGTTTGCCTCCCCTTAGACTCTTTCCATTTCTGAAGGAGCTTTCAATTGGAGGGTTTGATGGGATTGTGAGTATTAATGCTGATTTTTACGGGAGTAGCTCTTGTTCATTTACATCCTTGGAATCTTTAAATTTCTTCGATATGAAGGAAAGGGAAGAATGGGAATGTAAAGGTGTGACAGGTGCTTTTCCACGTCTTCAACGTCTTTCTATAGTGGATTGTCCCAAGCTGAAAGGTTTGCCTCCCCTTGGACTTTTGCCATTTCTGAAGGAGCTTTCAATTAAAGGGCTTGATGGGATTGTGAGTATTAATGCTGATTTTTTCGGGAGTAGCTCTTGTTCATTTACATCCTTGGAATCTTTGGAGTTCTCCGATATGAAGGAATGGGAAGAATGGGAATGTAAAGGTGTGACAGGTGCTTTTCCACGTCTTCAACGTCTTTCTATGGAGCGTTGTCCCAAGCTGAAAGGGCACTTGCCAGAGCAACTATGTCATTTAAATTATCTAAAGATTTCTGGGTGCGAACAACTTGTACCTTCTGCTCTCAGTGCCCCAGATATTCATCAATTAACCCTAGGAGACTGTGGAAAGCTGCAAATTGATCATCCGACAACTTTGAAAGAGCTTACCATTAGAGAGGAGGGTCTGCCCAAATCCATTTCAACTTTGTGGATTATCAATTGTCCGTTGCTCAAACAACGTTGCCGGGAACCCGAAGGCGAAGACTGGCCAAAGATTGCTCACATTAAACGCGTGTCGTTATTAGATTGA

Predicted protein sequences of Glyma13g25440

Limit To All Plant Sequences

>Glyma13g25440.2   sequence type=predicted peptide   gene model=Glyma13g25440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALELVGGALLNAFLQVAFEKLASHLVRDFFRGRKLDQKLLNNLEIKLNSIQALANDAELKQFRDPLVRNWLLKVKDAVFDAEDILDEIQHEISKCQVEAEAEAESQTCTCKVPNFFKSSPASSFNREIKSRMEEILDRLELLSSQKDDLGLKNASGVGVGSELGCAVPQISQSTSSVVESDIYGRDEDKKMIFDWLTSDNGNPNQPSILSIVGMGGMGKTTLAQLVFNDPRIEEARFDVKAWVCVSDDFDAFRVTRTILEAITKSTDDSRDLEMVHGRLKEKLTGKRFLLVLDDVWNENRLKWEAVLKHLVFGAQGSRIIATTRSKEVASTMRSEEHLLEQLQEDHCWKLFAKHAFQDDNIQPNPDCKEIGMKIVEKCKGLPLALKTMGSLLHNKSSVTEWKSILQSEIWEFSIERSDIVPALALSYHHLPSHLKRCFAYCALFPKDYEFDKECLIQLWMAEKFLQCSQQGKSPEEVGEQYFNDLLSRCFFQQSSNTERTDFVMHDLLNDLARFICGDICFRLDGNQTKGTPKATRHFLIDVKCFDGFGTLCDTKKLRTYMPTSDKYWDCEMSIHELFSKFNYLRVLSLSVCHDLREVPDSVGNLKYLRSLDLSNTGIEKLPESICSLYNLQILKLNGCEHLKELPSNLHKLTDLHRLELMYTGVRKVPAHLGKLEYLQVLMSSFNVGKSREFSIQQLGELNLHGSLSIENLQNVENPSDALAVDLKNKTHLVELELEWDSDWNPNDSMKKRDEIVIENLQPSKHLEKLKIRNYGGKQFPRWLFNNSLLNVVSLTLENCRSCQRLPPLRLFPFLKELSIGGFDGIVSINADFYGSSSCSFTSLESLNFFDMKEREEWECKGVTGAFPRLQRLSIVDCPKLKGLPPLGLLPFLKELSIKGLDGIVSINADFFGSSSCSFTSLESLEFSDMKEWEEWECKGVTGAFPRLQRLSMERCPKLKGHLPEQLCHLNYLKISGCEQLVPSALSAPDIHQLTLGDCGKLQIDHPTTLKELTIREEGLPKSISTLWIINCPLLKQRCREPEGEDWPKIAHIKRVSLLD*

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