Glyma13g25331 - SoyBase

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Report for Sequence Feature Glyma13g25331

Feature Type:	gene_model
Chromosome:	Gm13
Start:	28586095
stop:	28587298
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g25331

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11125	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61170.1). \| chr1:3718846-3719643 FORWARD LENGTH=265	SoyBase	E_val: 5.00E-13	ISS
UniRef100_I1M0F3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0F3_SOYBN	SoyBase	E_val: 7.00E-123	ISS
UniRef100_Q1W1G0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CK25 n=1 Tax=Nicotiana tabacum RepID=Q1W1G0_TOBAC	SoyBase	E_val: 6.00E-13	ISS

Expression Patterns of Glyma13g25331

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g25331 not represented in the dataset	Glyma13g25331 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g25331

Paralog	Evidence	Comments
Glyma07g31150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g25331 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g184100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g25331

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g25331

Limit To All Plant Sequences

>Glyma13g25331.1   sequence type=CDS   gene model=Glyma13g25331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGTTGTGTGAGTAGTAGTCACAAAACCTCAACCTCATCACTAGCAAAATTCCATGATCCACCAAAACCTCTCACTAAACCTTCAGAAAGCAATAGTACTGTAGAGGAGACAGTGAAGGAAGTGCTCTTGGAAACCCCGACAACCTTTGCCAAATCAAAACCACAAAAGCCACACCAAAACACAAACTTTCACAAGTTTATGGAAGAAAAAAGCAAGGTTGAGAAGAGGGCATTGACATTGTCCATTTACAAAGCCGAAGACACCACCACCTCAGAAGAAGTTTGCAGCTTGAGCAGAACCGTGTCCAGAGCTACTTCAATCACCGACCAGAGAGAAGAAATGCGCAAAAGGGTATATAGATCTCATCCCAAATTGCAGAAAAATCGTTCCTTTCCCGGTGAAAGAAGAGAGAGAACGGTGGTGCATGGTGCAAGGAACAATAATAATGTTGGGTCTGTGAGGTTGGTTCAGTGCAGAGACCAAACGAGTCAGAAAATTGGTAACGGCGGAACGGGTCGCCGGAGAGATGCCGCCGAGAATTCTCTCCGGCGGTCAAGGTCGCAGGCCACCGTCGCCGGCGCCGGAGCAGCTAGGCCCGTCATGGGTCGGAGCCCATATGTGAGAAAACCTAACCGGTCCACTGCGAGTATAGGAATCGGAACGGCGGAGAACGGTGGCCGGAAAACGGAGAAACCGGCGACGACGGAGAAATGGCCTTATGCGGGTGAGTCACTGGAGAATCCACTTGTGTCATTGGAATGCTTCATCTTTATATAG

Predicted protein sequences of Glyma13g25331

Limit To All Plant Sequences

>Glyma13g25331.1   sequence type=predicted peptide   gene model=Glyma13g25331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCCVSSSHKTSTSSLAKFHDPPKPLTKPSESNSTVEETVKEVLLETPTTFAKSKPQKPHQNTNFHKFMEEKSKVEKRALTLSIYKAEDTTTSEEVCSLSRTVSRATSITDQREEMRKRVYRSHPKLQKNRSFPGERRERTVVHGARNNNNVGSVRLVQCRDQTSQKIGNGGTGRRRDAAENSLRRSRSQATVAGAGAARPVMGRSPYVRKPNRSTASIGIGTAENGGRKTEKPATTEKWPYAGESLENPLVSLECFIFI*

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