Glyma13g25273 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma13g25273): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma13g25273): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma13g25273

Feature Type:	gene_model
Chromosome:	Gm13
Start:	28519719
stop:	28524810
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g25273

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G61120	AT	Annotation by Michelle Graham. TAIR10: terpene synthase 04 \| chr1:22523689-22528598 FORWARD LENGTH=877	SoyBase	E_val: 6.00E-145	ISS
GO:0000304	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to singlet oxygen	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0016102	GO-bp	Annotation by Michelle Graham. GO Biological Process: diterpenoid biosynthetic process	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0080027	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to herbivore	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0010333	GO-mf	Annotation by Michelle Graham. GO Molecular Function: terpene synthase activity	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
GO:0080013	GO-mf	Annotation by Michelle Graham. GO Molecular Function: (E,E)-geranyllinalool synthase activity	SoyBase	N/A	ISS
PF01397	PFAM	Terpene synthase, N-terminal domain	JGI		ISS
PF03936	PFAM	Terpene synthase family, metal binding domain	JGI		ISS
UniRef100_G7INZ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: S-linalool synthase n=1 Tax=Medicago truncatula RepID=G7INZ1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D627	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D627 related cluster n=1 Tax=unknown RepID=UPI000233D627	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g25273

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g25273 not represented in the dataset	Glyma13g25273 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g25273

Paralog	Evidence	Comments
Glyma07g31210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g25273 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g183600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g25273

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g25273

Limit To All Plant Sequences

>Glyma13g25273.1   sequence type=CDS   gene model=Glyma13g25273   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCAGCTCAACTTCACAGAGATTCCTTGGCATTTCATCTCCTAAGGATGCATGGATACATCGTATCACCATCATTACTGTTTCGTTGGTTTCTTGATGATGAAGAGATTAGAACACGAGTTGAAAAGGAACCCGAACACTTTTCAACTACAATGCTTTCAATGTACAGAGCCTCAAACCTTATTTTCTGTGGGGAAAATGAACTTGAGGATGTCAAATCTTTCACGAGGGATCTACTAAAGAGAAGCTTGCTAACTAAAAACGGTGAAACGCAGAGGAAATTGTCCCAATTCCAGCAAATGGTTCAACGTGAATTGAATATTCCGTGGCTGGCTCACATGGATCATTTGGATCATAGGATCTGGATAGAAGAAAATGAAGAAGTCAATTTCCTATGGAAAGGAAAGACCTCGCATGTTAGGATTTCACACTTTCACAACGTTGATCTCCTTCAACTTGCCATGCAAAATTACGAGTTTAAGCAATCAATTTTCAAAAGTGAATTAAAAGAATTGATGAGGTGGGCCCAAAATTGCGGTCTAACGAATATGGGATTTGGAAGAGAGAAGACCACATATTGTTACTATGCTATAGCTGCTGCCACTACCTATCCAAATGACACTTACGTACGAATGTTAGTGGCAAAGAGTGCTGTAATGATCACAGTTGCGGATGATTTCTTTGACGCAGAAGGATCATTCAAGGAGTTGAACGATTTCATGAATGCAGTTAGAAGGTGGGATTCTAAGGGCTTAAGTAGCCACGGCAAAGTCATATTTGAAGCTCTTGATAATCTCGTGAGTGAAGCTTCTGGAAAATATGTCGAACAAGGAGGGATTCATGATATACAAAGTAGTCTACAAGATCTATGGTATGAAACTTTCCTTTCGTGGCTAACGGAAGCAAAGTGGAACAAAAAGGGAGAGGCACCATCAATTGATGACTACCTGAAGAATGGGATGATCTCTATTGCCATACACACCATGATTCTTCCAGCTTCATGTTTTTTGAATCCCAGCTTGTCATACGAGAATCTCAGGCCGGCTCAATATGAACCCATCACTAAACTACTAATGGTTATATGTCGTCTATTAAATGATATACAGACCTACAAGAGGGAAACTGAAGAGGGAAAGTGGAATTTTCTTGGGCTCAATTTGATGAAGAACCCAAATTTTGGGATGGAAGATTCAATTGCTTTGGGGAGAGAGATCATAGATGAAAGGACGAAAGAGTTCATTCAGCATGTTCTAGTTAATGGTCAAAGTGATTTGCCCAAGCCTTGCAAGCTGCTGCATCTGACATGCTTGAAAGTTTTTCATCTGTTTTACAACTCTAGAAATGCATTTGACTCTAACACACAACTGCTTGAGGATATTAATAAAGCAATTTATCTTCCTCTACGGAGAAACACAAAGACCACCAAGATTGATCTCTCTCAGCTGCGTTCAATGCCAAAAATGAAAGATAAAAGTATTCAGAGGCCACGGTTCAATTGGTCCTTTAAACACAATAGAAGCTTTTGTGTGCATCAAGTAATTTCTCCACCTGCTTTAAGAAATGGATATGGGATAATATCCTTCAATCCGAAAGCCTTAATACCGGGCTTTATCTAA

Predicted protein sequences of Glyma13g25273

Limit To All Plant Sequences

>Glyma13g25273.1   sequence type=predicted peptide   gene model=Glyma13g25273   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAAQLHRDSLAFHLLRMHGYIVSPSLLFRWFLDDEEIRTRVEKEPEHFSTTMLSMYRASNLIFCGENELEDVKSFTRDLLKRSLLTKNGETQRKLSQFQQMVQRELNIPWLAHMDHLDHRIWIEENEEVNFLWKGKTSHVRISHFHNVDLLQLAMQNYEFKQSIFKSELKELMRWAQNCGLTNMGFGREKTTYCYYAIAAATTYPNDTYVRMLVAKSAVMITVADDFFDAEGSFKELNDFMNAVRRWDSKGLSSHGKVIFEALDNLVSEASGKYVEQGGIHDIQSSLQDLWYETFLSWLTEAKWNKKGEAPSIDDYLKNGMISIAIHTMILPASCFLNPSLSYENLRPAQYEPITKLLMVICRLLNDIQTYKRETEEGKWNFLGLNLMKNPNFGMEDSIALGREIIDERTKEFIQHVLVNGQSDLPKPCKLLHLTCLKVFHLFYNSRNAFDSNTQLLEDINKAIYLPLRRNTKTTKIDLSQLRSMPKMKDKSIQRPRFNWSFKHNRSFCVHQVISPPALRNGYGIISFNPKALIPGFI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain