Glyma13g25260 - SoyBase

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Report for Sequence Feature Glyma13g25260

Feature Type:	gene_model
Chromosome:	Gm13
Start:	28493023
stop:	28494880
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g25260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PTHR11474	Panther	TYROSINASE	JGI		ISS
PTHR11474:SF5	Panther	5,6-DIHYDROXYINDOLE-2-CARBOXYLIC ACID OXIDASE	JGI		ISS
PF00264	PFAM	Common central domain of tyrosinase	JGI		ISS
PF12142	PFAM	Polyphenol oxidase middle domain	JGI		ISS
PF12143	PFAM	Protein of unknown function (DUF B2219)	JGI		ISS
UniRef100_I1M0E6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0E6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q84YI1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polyphenol oxidase n=1 Tax=Trifolium pratense RepID=Q84YI1_TRIPR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g25260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g25260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g183500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g25260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g25260

Limit To All Plant Sequences

>Glyma13g25260.1   sequence type=CDS   gene model=Glyma13g25260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTATATCTCCTCTCTATCATCTTTCTCCCTCTCCAATTTCTCTGCACCTCTTCCCATTTCCATCTGTTCCTCATCTTCCGCCTTCCTAACTTCCCAAATACCATGCAAACCCACCAAACGTAGCAAACCAAAAGGCCATCATGTTTCCAAAGTGTCATGCAACAGTAACCAAAACACCCCAACACCAAACCCAGAAGAAGAAAAACCATCGTCATACAACATTCTAGGAAAACATCGGAGGGATGTTCTCCTTGGCATTGGAGGCCTTTACGGTGCTTCTGCTCTTAGCAACACCAACCCTTTAGCCATGGCTGCAGCTCCTATTCTCGAGCCTGACCTAGAACATTGTTGTATAACTGATGATGTACCACCTAAAGGGGTCATCGAGGCACAAGTCTATTGTTGCCCACCAAAATCTTCTTCCCCTCCTATAGATTTCAAGTTGCCTAAAGGAACACCCCTCAGGGTTAGACCACCTGCTCAATTTGTGACCGATGAGTACCTAGAAAAGTATAAGTTAGCCCTTAAGCGCATGAGAGAGCTTCCATCTGATGATCCTCGAAGTTTCAAGCAACAAGCTGATATCCATTGTGCTTATTGTGATGGTGGCTATAAGCAATTAGGGTTCCCAGTTGAGCTAGACTTCAAAGTCCACTTTTCATGGATATTTTTCCCTTTCCACCGTTGGTACCTCTATTTCTATGAGCGAATCTTGGGTAGCTTGATTGATGACCCAACCTTTGCACTTCCGTATTGGAACTGGGACAATCCTGATGGTGGCATGGTATTGCCTTCCATTTTCGCAGATGAAGACTCCCCTCTATATGACCCTCGCAGGAATCCAGACATCACACCAACTACTCTCGTAGACCTAAACTATGGCAGTGGAAAGGAACCAAGCGTAGAACAAAACCTCGGTGTAATGTATACGAGTGTTGTCTCTGGTGCGAAACGCGCATCGCTCTTCCATGGAAAACCATTTCTTGCTGGAAAGCAGCCTGAGCTAGGTGGAGGGACCGTAGAGCTTGGTCCTCATACTGCTGTCCACCGTTGGACCGGTGATCCAAGACAACCTAACAAAGAGGACATGGGGAGGTTCTATTCTGCTGGAAGAGACCCCGCTTTCTATTCTCACCATGCCAACGTGGATCGTATGTGGAATATATGGAAAACAATACCAAGTGGAAAAAGAAGGGATTTCAAAAACCGTGATTGGTTGGAAACCTCCTTTTTCTTCTACGATGAGAACAAGACCCTTGTCCGTGTGAAGGTGAAAGACAGCCTTGACACGAATAAGATGGGTTATGTTTACCAAGATGTCGCCATTCCATGGCTCGAGAAAAAGCCTAAACCCAAAAGAACTAGAAAGGCTAAGAAGGTGGCGTTCGCACAACAATTTGGCGGCATTGGTGCAGCAATGGCTGCTGAGACTGGGCCAAGTTCCAAGTTTCCTCTCACTTTGTTGGACTCAAAGGTAACCCTACTAGTTAAAAGGCCAAAGCAGTTGAGGAGCAAGAGGGACAAGGAGGAAGAGGAAGAAGTGTTGGTGATTGATGGGATTGAGTTTGATGGGGATGATGATGTGAAGTTTGATGTCTATATTACTGATGAAGATGTCGAGGATATTGGACCAGAGAGCACAGAGTTTGCAGGAAGCTTTTCGACTCTGGGTCATTCCCATTCGAACATGAACATGGACAAGAAGATCAAAACTAGCTTGACACTGGGAATAACAGATTTGTTAGAGGACTTGGATGCTGACAATGCAATTGTATTTTGCATTATCGATGACAAGGAGATCAATGATTCTCGTAAGAATTAA

Predicted protein sequences of Glyma13g25260

Limit To All Plant Sequences

>Glyma13g25260.1   sequence type=predicted peptide   gene model=Glyma13g25260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYISSLSSFSLSNFSAPLPISICSSSSAFLTSQIPCKPTKRSKPKGHHVSKVSCNSNQNTPTPNPEEEKPSSYNILGKHRRDVLLGIGGLYGASALSNTNPLAMAAAPILEPDLEHCCITDDVPPKGVIEAQVYCCPPKSSSPPIDFKLPKGTPLRVRPPAQFVTDEYLEKYKLALKRMRELPSDDPRSFKQQADIHCAYCDGGYKQLGFPVELDFKVHFSWIFFPFHRWYLYFYERILGSLIDDPTFALPYWNWDNPDGGMVLPSIFADEDSPLYDPRRNPDITPTTLVDLNYGSGKEPSVEQNLGVMYTSVVSGAKRASLFHGKPFLAGKQPELGGGTVELGPHTAVHRWTGDPRQPNKEDMGRFYSAGRDPAFYSHHANVDRMWNIWKTIPSGKRRDFKNRDWLETSFFFYDENKTLVRVKVKDSLDTNKMGYVYQDVAIPWLEKKPKPKRTRKAKKVAFAQQFGGIGAAMAAETGPSSKFPLTLLDSKVTLLVKRPKQLRSKRDKEEEEEVLVIDGIEFDGDDDVKFDVYITDEDVEDIGPESTEFAGSFSTLGHSHSNMNMDKKIKTSLTLGITDLLEDLDADNAIVFCIIDDKEINDSRKN*

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