Report for Sequence Feature Glyma13g25240
Feature Type: gene_model
Chromosome: Gm13
Start: 28473793
stop: 28477202
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g25240
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G27420 AT
Annotation by Michelle Graham. TAIR10: ABC-2 type transporter family protein | chr4:13712434-13714797 REVERSE LENGTH=638
SoyBase E_val: 0 ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016887 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATPase activity
SoyBase N/A ISS
GO:0017111 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity
SoyBase N/A ISS
GO:0042626 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances
SoyBase N/A ISS
KOG0061
KOG
Transporter, ABC superfamily (Breast cancer resistance protein)
JGI ISS
PTHR19241 Panther
ATP-BINDING CASSETTE TRANSPORTER
JGI ISS
PTHR19241:SF23 Panther
STEROLIN-2 RELATED
JGI ISS
PF00005 PFAM
ABC transporter
JGI ISS
PF01061 PFAM
ABC-2 type transporter
JGI ISS
UniRef100_B9T6P5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9T6P5_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233D625 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233D625 related cluster n=1 Tax=unknown RepID=UPI000233D625
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g25240
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g25240
Paralog Evidence Comments
Glyma07g31230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g25240 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g183400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g25240
Coding sequences of Glyma13g25240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g25240.1 sequence type=CDS gene model=Glyma13g25240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCAGAGGAAATGGCAAGTGAGAGGTTTTACTCTGTATCCCAGAGGTTGCAGTCAGATGAAGCAAAGCAAGATATCTATTTGAAAGTTAACAAACCTCTTACCCTCAGGTTTGAAGATGTTGTGCATAAAATAAAAATTAGCAAAGGGAAAGGCTTGTTATGCTACAACAAAGAGGTAAGTTCTGAGGAGACACTGGTCTTGAAAGGGATCAGTGGTGTTATTTTTCCAGGTGAATTGTTAGTCATTTTAGGCCCTTCTGGTTGTGGCAAAACAACTCTGTTAGCTGCTTTGGGAGGCCGGCTAAATCACAGTATCACTAGAGGAAGCATAACCTACAATGGCAAACCCCTCTCAAAATCAGTGAAGCAAAACCTGGGATTTGTTTCTCAACAAGATGTCTTCTATCCTCACCTATCAGTCAGTGAGACACTCATCTTTTCGGCTCTTCTTCGCTTGCCAAATAGCGTATCTAAAGAAGAGAAAATCTTAAAAGCTCAGGCAATTATGAATGAACTTGACCTGACTCATTGTAAGGACACTATAATGGGAGGGCCACTCCTAAGGGGAGTTTCGGGTGGAGAATGGAAAAGGGTTAGCATAGGTCAACAACTTTTAACTAATCCAAGTCTCTTGCTTGTTGATGAGCCTACTTCAGGTCTTGACTCTACAACTGCTAGAAGAATTGTGCTAACTCTATGTGAGTTAGCTAAAGATGGAAGGACTGTCATAATGACTATTCACCAGCCTTCCAGCAAACTTTTTTACATGTTCCAGAAGATTTTACTGCTATCAGATGGTAGAAGCCTGTACTTTGGGAAGGGAGAAAATGTTATGAATTACTTCTCCAGTATCGGTTATACTCCATCCGTAGCTATGAATCCAACTGATTTCTTACTTGATCTTGCAAATGGTATTTATTCTGAAAATTTGGAAGAGGATACAAATGCTACAAAACAGGTGTTACTATCTGCTTTTGAGAGTAACCTTGCAAGCCAAGTGAAGATGGAACTTCAAATTTCCAGGGATTCAATCCATCACAATTCAGAAGATGAGATATTCGGTCAACATTGCACAACTTGGTGGCAGCAGTTTACTATATTACTAAGAAGGGGTTTCAAAGAAAGAAAGTATGAGCAATTTTCACCCCACAAAATCTGTCATGTTTTCGTCTTGTCATTCTTTGCAGGCTCTCTCTGGTGGCAGTCTGGAGCTGATCAAATGCATGACCAGGTAGCACTACTTTTCTACTATACACAATTTTGTGGATTCTTCCCTATGGTCCAGTCTATTTTTACATTTCCTCGTGATCGCGAAATGATAATAAAGGAAAGGTCCTTCTACATGTATAGACTCTCATCTTACATCATAGCAAGTAATCTTGATGACCTTCCATTGCAGCTAGCCTTGCCAACCCTTCTTGTCACTGTTACTTATTGGATGGGAGGGCTAAAAGCCAAAGCTTCAATTTTCTTTCGTACTCTAGCTGTTGCTCTTCTCTATTCTTTGGTATCACAAGGTTTTGGCCTTGCTATTGGAGCATTGCTGATAAATAATCAAAAAGTAGCTATTACAGTTGGAACTGTGGTCATGACATTGTTTCTTCTAGTTAATGGCTTCTTTGTTCGAAATACGCCAGCATTTGTGTCCTGGATAAAGTACCTATCTCATGGCTATTATTCCTATAAGCTCTTGCTAGGATCACAGTTTAACGGTTATGACACTTACCATTGTGGTCAAAATGTCACCTGCTCAGCTGTGAACTATCCTACAATTAAGCATGTGGGCATTGACAAGCAAGGTTTATCTGTTGCTGCTTTGGTGGCAATGCTTGTAGGCTACAGACTTATTGCCTATTTTGCCCTTAGGATTGGCACTAAACTTAACTAG
Predicted protein sequences of Glyma13g25240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g25240.1 sequence type=predicted peptide gene model=Glyma13g25240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSEEMASERFYSVSQRLQSDEAKQDIYLKVNKPLTLRFEDVVHKIKISKGKGLLCYNKEVSSEETLVLKGISGVIFPGELLVILGPSGCGKTTLLAALGGRLNHSITRGSITYNGKPLSKSVKQNLGFVSQQDVFYPHLSVSETLIFSALLRLPNSVSKEEKILKAQAIMNELDLTHCKDTIMGGPLLRGVSGGEWKRVSIGQQLLTNPSLLLVDEPTSGLDSTTARRIVLTLCELAKDGRTVIMTIHQPSSKLFYMFQKILLLSDGRSLYFGKGENVMNYFSSIGYTPSVAMNPTDFLLDLANGIYSENLEEDTNATKQVLLSAFESNLASQVKMELQISRDSIHHNSEDEIFGQHCTTWWQQFTILLRRGFKERKYEQFSPHKICHVFVLSFFAGSLWWQSGADQMHDQVALLFYYTQFCGFFPMVQSIFTFPRDREMIIKERSFYMYRLSSYIIASNLDDLPLQLALPTLLVTVTYWMGGLKAKASIFFRTLAVALLYSLVSQGFGLAIGALLINNQKVAITVGTVVMTLFLLVNGFFVRNTPAFVSWIKYLSHGYYSYKLLLGSQFNGYDTYHCGQNVTCSAVNYPTIKHVGIDKQGLSVAALVAMLVGYRLIAYFALRIGTKLN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
