SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| PTHR11474 | Panther | TYROSINASE | JGI | ISS | |
| PTHR11474:SF5 | Panther | 5,6-DIHYDROXYINDOLE-2-CARBOXYLIC ACID OXIDASE | JGI | ISS | |
| PF00264 | PFAM | Common central domain of tyrosinase | JGI | ISS | |
| PF12142 | PFAM | Polyphenol oxidase middle domain | JGI | ISS | |
| PF12143 | PFAM | Protein of unknown function (DUF B2219) | JGI | ISS | |
| UniRef100_I1M0E2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0E2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q84YI1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Polyphenol oxidase n=1 Tax=Trifolium pratense RepID=Q84YI1_TRIPR | SoyBase | E_val: 0 | ISS |
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Glyma13g25150 not represented in the dataset |
Glyma13g25150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g183000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g25150.1 sequence type=CDS gene model=Glyma13g25150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTATATCTCCTCTCTATCATCTTTCTCCCTCTCCAATTTCTCTGCACCTCTTCCCATTTCCATTTGTTCCTCATCTTCCGCATTCCTAACTTCCCAAATACCATGCAAACCCTCCAAACGTAGCAAACCAAAAGGCCATCATGTTTCCAAAGTGTCATGCAACAGTAACCAAAACACCCCAACACCAAACCCAGAAGAAGAAAAACCATCGTCATACAACATTCTAGGAAAACATAGGAGGGATATTCTCCTTGGCATTGGGGGCCTTTACGGTGCTTCTGCTCTTAGCAACACCAACCCTTTAGCCATGGCTGCAGCTCCTATTCTAGAGCCTGACCTAGAACATTGTTGTATAACTGATGATGTACCTAAAGGGGAAATCGAGAAACAAGTCTATTGTTGCCCACCAAAATCTTCTTCCCCTCCTATAGATTTCAAGTTGCCTAAAGGAACACCCCTTAGGGTTAGACCACCTGCTCAATTTGTGACCGATGAGTACCTAGAAAAGTATAAGTTAGCCCTTAAGCGCATGAGAGAGCTTCCATCTGATGATCCTCGAAGTTTCAAGCAACAAGCTGATATCCATTGTGCTTATTGTGATGGTGGCTATAAGCAATTAGGGTTCCCAGTTGAGCTAGACTTCAAAGTCCACTTTTCATGGATATTTTTCCCTTTCCACCGTTGGTACCTCTATTTCTATGAGCGAATCTTGGGTAGCTTGATTGATGACCCAACCTTTGCACTTCCATATTGGAACTGGGACAATCCTGATGGTGGCATGGTATTGCCTTCCATTTTCGCAGATGAAGACTCCCCTCTATATGACCCTCGCAGGAATCCAGACATCACACCAACTACTCTCGTAGACCTAAACTATGGCAGTGGAAAGGAACCAAGCGTAGAACAAAACCTCGGTGTAATGTATACGAGTGTTGTCTCTGGTGCGAAACGCGCATCGCTCTTCCATGGAAAACCATTTCTTGCTGGAAAGCAGCCTGAGCTAGGTGGAGGGACCGTAGAGCTTGGTCCTCATACTGCTGTCCACCGTTGGACCGGTGATCCAAGACAACCTAACAAAGAGGACATGGGGAGGTTCTATTCTGCTGGAAGAGACCCCGCTTTCTATTCTCACCATGCCAACGTGGATCGTATGTGGAATATATGGAAAACAATACCAAGTGGAAAAAGAAGGGATTTCAAAAACCGTGATTGGTTGGAAACCTCCTTTTTCTTCTACGATGAGAACAAGACCCTTGTCCGTGTGAAGGTGAAAGACAGCCTTGACACGAATAAGATGGGTTATGTTTACCAAGATGTCGCCATTCCATGGCTCGAGAAAAAGCCTAAACCCAAAAGAACTAGAAAGGCTAAGAAGGTGGCGTTCGCACAACAATTTGGCGGCATTGGTGCAGCAATGGCTGCTGAGACTGGGCCAAGTTCCAAGTTTCCTCTCACTTTGTTGGACTCAAAGGTAACCCTACTAGTTAAAAGGCCAAAGCAGTTGAGGAGCAAGAGGGACAAGGAGGAAGAGGAAGAAGTGTTGGTGATTGATGGGATTGAGTTTGATGGGGATGATGATGTGAAGTTTGATGTCTATATTACTGATGAGATGTCGAGGGATATTGGACCAGAGAGCACAGAGTTTGCAGGAAGCTTTTCGACTCTGGTGTTTTGGTCACACTGGTACCACGATCTGAGAATGTAA
>Glyma13g25150.1 sequence type=predicted peptide gene model=Glyma13g25150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAYISSLSSFSLSNFSAPLPISICSSSSAFLTSQIPCKPSKRSKPKGHHVSKVSCNSNQNTPTPNPEEEKPSSYNILGKHRRDILLGIGGLYGASALSNTNPLAMAAAPILEPDLEHCCITDDVPKGEIEKQVYCCPPKSSSPPIDFKLPKGTPLRVRPPAQFVTDEYLEKYKLALKRMRELPSDDPRSFKQQADIHCAYCDGGYKQLGFPVELDFKVHFSWIFFPFHRWYLYFYERILGSLIDDPTFALPYWNWDNPDGGMVLPSIFADEDSPLYDPRRNPDITPTTLVDLNYGSGKEPSVEQNLGVMYTSVVSGAKRASLFHGKPFLAGKQPELGGGTVELGPHTAVHRWTGDPRQPNKEDMGRFYSAGRDPAFYSHHANVDRMWNIWKTIPSGKRRDFKNRDWLETSFFFYDENKTLVRVKVKDSLDTNKMGYVYQDVAIPWLEKKPKPKRTRKAKKVAFAQQFGGIGAAMAAETGPSSKFPLTLLDSKVTLLVKRPKQLRSKRDKEEEEEVLVIDGIEFDGDDDVKFDVYITDEMSRDIGPESTEFAGSFSTLVFWSHWYHDLRM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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