Glyma13g25140 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g25140

Feature Type:	gene_model
Chromosome:	Gm13
Start:	28406234
stop:	28413501
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g25140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62050	AT	Annotation by Michelle Graham. TAIR10: homolog of yeast oxidase assembly 1 (OXA1) \| chr5:24924062-24926758 REVERSE LENGTH=429	SoyBase	E_val: 5.00E-148	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0045039	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0051205	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein insertion into membrane	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015450	GO-mf	Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	SoyBase	N/A	ISS
KOG1239	KOG	Inner membrane protein translocase involved in respiratory chain assembly	JGI		ISS
PTHR12428	Panther	CYTOCHROME OXIDASE BIOGENESIS PROTEIN	JGI		ISS
PTHR12428:SF3	Panther	CYTOCHROME OXIDASE BIOGENESIS PROTEIN (OXA1 MITOCHONDRIAL)	JGI		ISS
PF02096	PFAM	60Kd inner membrane protein	JGI		ISS
UniRef100_G7KR78	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial inner membrane protein OXA1 n=1 Tax=Medicago truncatula RepID=G7KR78_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M0E1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0E1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g25140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g25140

Paralog	Evidence	Comments
Glyma07g31320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g25140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g182900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g25140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g25140

Limit To All Plant Sequences

>Glyma13g25140.3   sequence type=transcript   gene model=Glyma13g25140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTGGTCAAAACGGCGTCATTCAGCAGCTCATGGGCGTCGTTTCGAGGCTAGAGAGTGAAAGTAGTAGTGTACCCACAAACCCCTTCTTCTATTCCATTTTGTTTGGAACACTGCGTAAGGCTGCGCCACCACCTCCGCCTCCGTCGTCCACGGCCAGTTGCTTGCGTTCCTTTCACTTTTTTTATAATTGGCTAAGAATAATAATGGCGTACCGGCGCTGCCTCTTGATAAGAGGGAGCCTCGTGGATCGGAGGTGCCATCTGTCTTTCAGTTATGTTCTCCACAGCAACGAGGGGAAGCGCGAACGCACCAATGAAAAATCATCTTCAGGAGGGGTTGGTGATTTTACTCAAACAAGGTCCTTTGGAAGCTCTCTTAATGGACAGATGGGGTTCTTCTCGCCTTCCCGAGATAGATTTCTTTCTCCATGCACCGGATATGGTTTCTGCCAATATATGTCGACGGTGAATCGGGGTTCAGATAAGATTGGCAGTGATGTAATGACTGATGTGGCTGATGTCCTCGCTGACACGACCATGGATTCTGTAGCTTCTCAGGCTCCTGTTGTTAATGAGGTTGCTATTGCTGCTGCTGATTCTTTTTTGCCTGTACAGGCCTTGCAGTACGTGATAGATGCTGTGCATTTCTACACTGGCTTAAATTGGTGGGCAGCCATAGTTCTAACAACCCTGTTGATTCGAACCGCTACAGTTCCACTCTTAATAAATCAACTTAAGGCCACTTCTAAACTTACGTTAATGAGGCCTCACTTAGAAGAGATAAAGCAAGAAATGGAGGGACTGACTATGGATCCTGTAGCTGTTGCTAAAGGTCAGCAGCAGATGAAGAAGCTATTTAAGGAATATGGTGTGAGTCCTTTTACGCCATTGAAAGGACTCTTTATTCAAGGCCCTATTTTTGTTAGTTTTTTTCTTGCGATAACAAATATGGCTGAAAAAGTGCCGTCATTCAAGCATGGTGGAGCTTCTTGGTTTATTGATCTCTCAACTCCTGATGCCCTTGTAATATGCAAGAAGGGATGGAAGGAAATCCTGTGGCTGGTACCATGAAAAATGTCTCTAGGGGTCTTGCTGTTCTTACAGTTCCTTTCACCATGGGATTTCCAAAGGCAATATTCTGTTACTGGGTTACATCAAATTTGTTTTCACTTGTGTATGGACTTGTGCTTAAAGTTCCTGGCGTAAAGAAAACTTTGGGTATTCCTGAAATACCTGTTGCTCCACCCACCACGACCAGTGCTACTCAATCTCCCTTTTCTATATTTCCTGCTCTAAAACAAGCTACATCTGCAACAAGAAATGGGTCAAGCTCAATACCAGATGAAGCTTCAAAACATTCAAATAAAAAGATATCTTCTGCTTCTGTTATTAGTCAAAGGCTTAGAAGTTTAGAGAAACAAGTGAAAGGAAGAAAGAAGAACAAGAAGTGAGGAAAATTTACAATAATCCTAAATTATAACATCTATACATGGAGCAATTGTGCTCAGCATTTTGTTATATTTTATTATCCTGGGATGAGGGAGAAATTAGTTCGAACTTTGTATGTTTAGTCTACACTCGATTCATCGGTTTCTCAATTCTTGTGTAAAACTTGGTCCCTATCAGAAAGGGCGGCCTCAATAATTTTATATAACTTTTCACCCTTCATTTTGATTTTAGAAATTAATGTGATCAAAAGATGGCTAATATGAGCTCTTATTTGACACAAATGGTAAGAGTTTCAACTTTAGTTCAAGTGTGCTTATTTTATTAGGATACTAGGCAATTATTATTTTTTA

>Glyma13g25140.4   sequence type=transcript   gene model=Glyma13g25140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTGGTCAAAACGGCGTCATTCAGCAGCTCATGGGCGTCGTTTCGAGGCTAGAGAGTGAAAGTAGTAGTGTACCCACAAACCCCTTCTTCTATTCCATTTTGTTTGGAACACTGCGTAAGGCTGCGCCACCACCTCCGCCTCCGTCGTCCACGGCCAGTTGCTTGCGTTCCTTTCACTTTTTTTATAATTGGCTAAGAATAATAATGGCGTACCGGCGCTGCCTCTTGATAAGAGGGAGCCTCGTGGATCGGAGGTGCCATCTGTCTTTCAGTTATGTTCTCCACAGCAACGAGGGGAAGCGCGAACGCACCAATGAAAAATCATCTTCAGGAGGGGTTGGTGATTTTACTCAAACAAGGTCCTTTGGAAGCTCTCTTAATGGACAGATGGGGTTCTTCTCGCCTTCCCGAGATAGATTTCTTTCTCCATGCACCGGATATGGTTTCTGCCAATATATGTCGACGGTGAATCGGGGTTCAGATAAGATTGGCAGTGATGTAATGACTGATGTGGCTGATGTCCTCGCTGACACGACCATGGATTCTGTAGCTTCTCAGGCTCCTGTTGTTAATGAGGTTGCTATTGCTGCTGCTGATTCTTTTTTGCCTGTACAGGCCTTGCAGTACGTGATAGATGCTGTGCATTTCTACACTGGCTTAAATTGGTGGGCAGCCATAGTTCTAACAACCCTGTTGATTCGAACCGCTACAGTTCCACTCTTAATAAATCAACTTAAGGCCACTTCTAAACTTACGTTAATGAGGCCTCACTTAGAAGAGATAAAGCAAGAAATGGAGGGACTGACTATGGATCCTGTAGCTGTTGCTAAAGGTCAGCAGCAGATGAAGAAGCTATTTAAGGAATATGGTGTGAGTCCTTTTACGCCATTGAAAGGACTCTTTATTCAAGGCCCTATTTTTGTTAGTTTTTTTCTTGCGATAGATAACAAATATGGCTGAAAAAGTGCCGTCATTCAAGCATGGTGGAGCTTCTTGGTTTATTGATCTCTCAACTCCTGATGCCCTGTACGTTTTTCCAGTTTTGACAGCATTGTCATTCTTAATAACAGTAGAGTGTAATATGCAAGAAGGGATGGAAGGAAATCCTGTGGCTGGTACCATGAAAAATGTCTCTAGGGGTCTTGCTGTTCTTACAGTTCCTTTCACCATGGGATTTCCAAAGGCAATATTCTGTTACTGGGTTACATCAAATTTGTTTTCACTTGTGTATGGACTTGGTAAGGCTCTTGAAAATTTTCATTTCCTATTTTACTTTGTCTT

Coding sequences of Glyma13g25140

Limit To All Plant Sequences

>Glyma13g25140.2   sequence type=CDS   gene model=Glyma13g25140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGTCGTTTCGAGGCTAGAGAGTGAAAGTAGTAGTGTACCCACAAACCCCTTCTTCTATTCCATTTTGTTTGGAACACTGCGTAAGGCTGCGCCACCACCTCCGCCTCCGTCGTCCACGGCCAGTTGCTTGCGTTCCTTTCACTTTTTTTATAATTGGCTAAGAATAATAATGGCGTACCGGCGCTGCCTCTTGATAAGAGGGAGCCTCGTGGATCGGAGGTGCCATCTGTCTTTCAGTTATGTTCTCCACAGCAACGAGGGGAAGCGCGAACGCACCAATGAAAAATCATCTTCAGGAGGGGTTGGTGATTTTACTCAAACAAGGTCCTTTGGAAGCTCTCTTAATGGACAGATGGGGTTCTTCTCGCCTTCCCGAGATAGATTTCTTTCTCCATGCACCGGATATGGTTTCTGCCAATATATGTCGACGGTGAATCGGGGTTCAGATAAGATTGGCAGTGATGTAATGACTGATGTGGCTGATGTCCTCGCTGACACGACCATGGATTCTGTAGCTTCTCAGGCTCCTGTTGTTAATGAGGTTGCTATTGCTGCTGCTGATTCTTTTTTGCCTGTACAGGCCTTGCAGTACGTGATAGATGCTGTGCATTTCTACACTGGCTTAAATTGGTGGGCAGCCATAGTTCTAACAACCCTGTTGATTCGAACCGCTACAGTTCCACTCTTAATAAATCAACTTAAGGCCACTTCTAAACTTACGTTAATGAGGCCTCACTTAGAAGAGATAAAGCAAGAAATGGAGGGACTGACTATGGATCCTGTAGCTGTTGCTAAAGGTCAGCAGCAGATGAAGAAGCTATTTAAGGAATATGGTGTGAGTCCTTTTACGCCATTGAAAGGACTCTTTATTCAAGGCCCTATTTTTGTTAGTTTTTTTCTTGCGATAACAAATATGGCTGAAAAAGTGCCGTCATTCAAGCATGGTGGAGCTTCTTGGTTTATTGATCTCTCAACTCCTGATGCCCTGTACGTTTTTCCAGTTTTGACAGCATTGTCATTCTTAATAACAGTAGAGTGTAATATGCAAGAAGGGATGGAAGGAAATCCTGTGGCTGGTACCATGAAAAATGTCTCTAGGGGTCTTGCTGTTCTTACAGTTCCTTTCACCATGGGATTTCCAAAGGCAATATTCTGTTACTGGGTTACATCAAATTTGTTTTCACTTGTGTATGGACTTGTGCTTAAAGTTCCTGGCGTAAAGAAAACTTTGGGTATTCCTGAAATACCTGTTGCTCCACCCACCACGACCAGTGCTACTCAATCTCCCTTTTCTATATTTCCTGCTCTAAAACAAGCTACATCTGCAACAAGAAATGGGTCAAGCTCAATACCAGATGAAGCTTCAAAACATTCAAATAAAAAGATATCTTCTGCTTCTGTTATTAGTCAAAGGCTTAGAAGTTTAGAGAAACAAGTGAAAGGAAGAAAGAAGAACAAGAAGTGA

>Glyma13g25140.3   sequence type=CDS   gene model=Glyma13g25140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGTCGTTTCGAGGCTAGAGAGTGAAAGTAGTAGTGTACCCACAAACCCCTTCTTCTATTCCATTTTGTTTGGAACACTGCGTAAGGCTGCGCCACCACCTCCGCCTCCGTCGTCCACGGCCAGTTGCTTGCGTTCCTTTCACTTTTTTTATAATTGGCTAAGAATAATAATGGCGTACCGGCGCTGCCTCTTGATAAGAGGGAGCCTCGTGGATCGGAGGTGCCATCTGTCTTTCAGTTATGTTCTCCACAGCAACGAGGGGAAGCGCGAACGCACCAATGAAAAATCATCTTCAGGAGGGGTTGGTGATTTTACTCAAACAAGGTCCTTTGGAAGCTCTCTTAATGGACAGATGGGGTTCTTCTCGCCTTCCCGAGATAGATTTCTTTCTCCATGCACCGGATATGGTTTCTGCCAATATATGTCGACGGTGAATCGGGGTTCAGATAAGATTGGCAGTGATGTAATGACTGATGTGGCTGATGTCCTCGCTGACACGACCATGGATTCTGTAGCTTCTCAGGCTCCTGTTGTTAATGAGGTTGCTATTGCTGCTGCTGATTCTTTTTTGCCTGTACAGGCCTTGCAGTACGTGATAGATGCTGTGCATTTCTACACTGGCTTAAATTGGTGGGCAGCCATAGTTCTAACAACCCTGTTGATTCGAACCGCTACAGTTCCACTCTTAATAAATCAACTTAAGGCCACTTCTAAACTTACGTTAATGAGGCCTCACTTAGAAGAGATAAAGCAAGAAATGGAGGGACTGACTATGGATCCTGTAGCTGTTGCTAAAGGTCAGCAGCAGATGAAGAAGCTATTTAAGGAATATGGTGTGAGTCCTTTTACGCCATTGAAAGGACTCTTTATTCAAGGCCCTATTTTTGTTAGTTTTTTTCTTGCGATAACAAATATGGCTGAAAAAGTGCCGTCATTCAAGCATGGTGGAGCTTCTTGGTTTATTGATCTCTCAACTCCTGATGCCCTTGTAATATGCAAGAAGGGATGGAAGGAAATCCTGTGGCTGGTACCATGA

>Glyma13g25140.4   sequence type=CDS   gene model=Glyma13g25140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGTCGTTTCGAGGCTAGAGAGTGAAAGTAGTAGTGTACCCACAAACCCCTTCTTCTATTCCATTTTGTTTGGAACACTGCGTAAGGCTGCGCCACCACCTCCGCCTCCGTCGTCCACGGCCAGTTGCTTGCGTTCCTTTCACTTTTTTTATAATTGGCTAAGAATAATAATGGCGTACCGGCGCTGCCTCTTGATAAGAGGGAGCCTCGTGGATCGGAGGTGCCATCTGTCTTTCAGTTATGTTCTCCACAGCAACGAGGGGAAGCGCGAACGCACCAATGAAAAATCATCTTCAGGAGGGGTTGGTGATTTTACTCAAACAAGGTCCTTTGGAAGCTCTCTTAATGGACAGATGGGGTTCTTCTCGCCTTCCCGAGATAGATTTCTTTCTCCATGCACCGGATATGGTTTCTGCCAATATATGTCGACGGTGAATCGGGGTTCAGATAAGATTGGCAGTGATGTAATGACTGATGTGGCTGATGTCCTCGCTGACACGACCATGGATTCTGTAGCTTCTCAGGCTCCTGTTGTTAATGAGGTTGCTATTGCTGCTGCTGATTCTTTTTTGCCTGTACAGGCCTTGCAGTACGTGATAGATGCTGTGCATTTCTACACTGGCTTAAATTGGTGGGCAGCCATAGTTCTAACAACCCTGTTGATTCGAACCGCTACAGTTCCACTCTTAATAAATCAACTTAAGGCCACTTCTAAACTTACGTTAATGAGGCCTCACTTAGAAGAGATAAAGCAAGAAATGGAGGGACTGACTATGGATCCTGTAGCTGTTGCTAAAGGTCAGCAGCAGATGAAGAAGCTATTTAAGGAATATGGTGTGAGTCCTTTTACGCCATTGAAAGGACTCTTTATTCAAGGCCCTATTTTTGTTAGTTTTTTTCTTGCGATAGATAACAAATATGGCTGA

Predicted protein sequences of Glyma13g25140

Limit To All Plant Sequences

>Glyma13g25140.2   sequence type=predicted peptide   gene model=Glyma13g25140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVVSRLESESSSVPTNPFFYSILFGTLRKAAPPPPPPSSTASCLRSFHFFYNWLRIIMAYRRCLLIRGSLVDRRCHLSFSYVLHSNEGKRERTNEKSSSGGVGDFTQTRSFGSSLNGQMGFFSPSRDRFLSPCTGYGFCQYMSTVNRGSDKIGSDVMTDVADVLADTTMDSVASQAPVVNEVAIAAADSFLPVQALQYVIDAVHFYTGLNWWAAIVLTTLLIRTATVPLLINQLKATSKLTLMRPHLEEIKQEMEGLTMDPVAVAKGQQQMKKLFKEYGVSPFTPLKGLFIQGPIFVSFFLAITNMAEKVPSFKHGGASWFIDLSTPDALYVFPVLTALSFLITVECNMQEGMEGNPVAGTMKNVSRGLAVLTVPFTMGFPKAIFCYWVTSNLFSLVYGLVLKVPGVKKTLGIPEIPVAPPTTTSATQSPFSIFPALKQATSATRNGSSSIPDEASKHSNKKISSASVISQRLRSLEKQVKGRKKNKK*

>Glyma13g25140.3   sequence type=predicted peptide   gene model=Glyma13g25140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVVSRLESESSSVPTNPFFYSILFGTLRKAAPPPPPPSSTASCLRSFHFFYNWLRIIMAYRRCLLIRGSLVDRRCHLSFSYVLHSNEGKRERTNEKSSSGGVGDFTQTRSFGSSLNGQMGFFSPSRDRFLSPCTGYGFCQYMSTVNRGSDKIGSDVMTDVADVLADTTMDSVASQAPVVNEVAIAAADSFLPVQALQYVIDAVHFYTGLNWWAAIVLTTLLIRTATVPLLINQLKATSKLTLMRPHLEEIKQEMEGLTMDPVAVAKGQQQMKKLFKEYGVSPFTPLKGLFIQGPIFVSFFLAITNMAEKVPSFKHGGASWFIDLSTPDALVICKKGWKEILWLVP*

>Glyma13g25140.4   sequence type=predicted peptide   gene model=Glyma13g25140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVVSRLESESSSVPTNPFFYSILFGTLRKAAPPPPPPSSTASCLRSFHFFYNWLRIIMAYRRCLLIRGSLVDRRCHLSFSYVLHSNEGKRERTNEKSSSGGVGDFTQTRSFGSSLNGQMGFFSPSRDRFLSPCTGYGFCQYMSTVNRGSDKIGSDVMTDVADVLADTTMDSVASQAPVVNEVAIAAADSFLPVQALQYVIDAVHFYTGLNWWAAIVLTTLLIRTATVPLLINQLKATSKLTLMRPHLEEIKQEMEGLTMDPVAVAKGQQQMKKLFKEYGVSPFTPLKGLFIQGPIFVSFFLAIDNKYG*

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