Glyma13g25130 - SoyBase

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Report for Sequence Feature Glyma13g25130

Feature Type:	gene_model
Chromosome:	Gm13
Start:	28394752
stop:	28402395
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g25130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G61065	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1218) \| chr1:22490430-22491330 REVERSE LENGTH=180	SoyBase	E_val: 3.00E-75	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF06749	PFAM	Protein of unknown function (DUF1218)	JGI		ISS
UniRef100_C6TFG2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TFG2_SOYBN	SoyBase	E_val: 7.00E-111	ISS
UniRef100_Q6T7D3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fiber protein Fb34 n=1 Tax=Gossypium barbadense RepID=Q6T7D3_GOSBA	SoyBase	E_val: 3.00E-68	ISS

Expression Patterns of Glyma13g25130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g25130

Paralog	Evidence	Comments
Glyma07g31330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g25130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g182800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g25130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g25130

Limit To All Plant Sequences

>Glyma13g25130.2   sequence type=CDS   gene model=Glyma13g25130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCGTCTCTCTTACTGGCGGTGGTGGTTGTGCTTGATATGGTTGCTTTTGCTCTCGCTGTTGCTGCAAAGCAAAGAAGGAATACTGCCTCGTTAAATAAAGACAGTGCAGGTAGAAACTACTGTCAATATGACTCAGACATTGCAACCAACCTAGGAGTGGGGTCCTTTTTTATCCTAGTTGCCAGTCAAGTGATCATTATGGTTGTAACTAGATGCCTGTGCTGTGGGAAAGCTATGAGACCCAGTGGATCAAGATCATGGGCAATTTGCTTATTCATCACTAGTTGGGTAACATTTTTCATTGCTGCTTCGTGCCTGCTAGCGGGTTCTGTGAGGAATGCTTACCACACCAATTACCGCGATCTCATGGGAGAGAGAGCACCTTCATGCCAGACCTTGAGGAAGGGAGTGTTTGGAGCTGGAGCTGCTTTCATTATTTTCAAAGGCATAACCTCAGACCTTTATTATGTTAGTTTTTCGAAAGCTAATAATAATGGTCCTCCTCCCTATGCTAGGGACACTGGTGTGAGGATGGGAAATTTGTAG

Predicted protein sequences of Glyma13g25130

Limit To All Plant Sequences

>Glyma13g25130.2   sequence type=predicted peptide   gene model=Glyma13g25130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLLLAVVVVLDMVAFALAVAAKQRRNTASLNKDSAGRNYCQYDSDIATNLGVGSFFILVASQVIIMVVTRCLCCGKAMRPSGSRSWAICLFITSWVTFFIAASCLLAGSVRNAYHTNYRDLMGERAPSCQTLRKGVFGAGAAFIIFKGITSDLYYVSFSKANNNGPPPYARDTGVRMGNL*

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