SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G45100 | AT | Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein | chr3:16504648-16506858 FORWARD LENGTH=447 | SoyBase | E_val: 0 | ISS |
| GO:0006506 | GO-bp | Annotation by Michelle Graham. GO Biological Process: GPI anchor biosynthetic process | SoyBase | N/A | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| KOG1111 | KOG | N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase | JGI | ISS | |
| PTHR12526 | Panther | GLYCOSYLTRANSFERASE | JGI | ISS | |
| PTHR12526:SF58 | Panther | SETH2, TRANSFERASE, TRANSFERRING GLYCOSYL GROUPS | JGI | ISS | |
| PF00534 | PFAM | Glycosyl transferases group 1 | JGI | ISS | |
| PF08288 | PFAM | PIGA (GPI anchor biosynthesis) | JGI | ISS | |
| UniRef100_B9STX3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9STX3_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M0D4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0D4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g25060 not represented in the dataset |
Glyma13g25060 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g182200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g25060.1 sequence type=CDS gene model=Glyma13g25060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGATTCGCCACCCCAAAAGCATAGAATTTTGATGGTGTCTGATTTTTACTATCCCAACTTTGGTGGTGTCGAGAACCACGCTTATTATCTCTCTCAATGCTTGCTCAAGTTAGGCCACAAGGTGGTAGTGGTAACTCATGCTTATGGAAATCGCTCTGGGGTTAGATATATGACTGGTAGTTTGAAAGTTTACTATGTTCCATGGAGACCATTCTGTAATCAGAGTACATTTCCAACTTTATATGGAATACTACCAATTATAAGAACAATTCTCATTAGAGAAAGAATTACTGTAGTGCATGGACACCAAACCTTTTCAACACTTTGCCATGATGCACTTTTGCATGCTAGGATCATGGGATACAAGGTTGTTTTCACTGATCATTCACTGCATGGTTTTGGAGATGTTGGAAGCATCCACATGAACAAGGTGATGCAGTTTACCTTGGCAGATGTGAGCCAAGCTATCTGTGTTTCCCACACAAGCAAGGAAAACACGGTGTTGAGGTCAGGTTTGGCACCAGAGAAGGTTTTTGTTATTCCTAATGCTGTTGACACTGCCATGTTCAAGCCAGCATTGGAGCGCCCTGGCGGATTGGAGATTGTTGTAGTTGTTATCAGTCGATTGGTTTACCGGAAAGGAGCAGACTTGCTTGTTGAAGTTATTCCGGAAGTATGCCGGTTACATCCTAATGTTCGATTCATTATTGGTGGTGATGGACCTAAGCGGGTGCGGTTGGAAGAGATGAGAGAAAAACACTCTCTTTTTGATCGAGTTGAATTATTGGGAGCTGTACCACATGCACAAGTTCGATCTGTTCTAATATCTGGGCATATCTTCTTAACCTGTTCCTTGACAGAAGCTTTTTGCATGGCCATATTAGAGGCTGCTAGTTGTGGATTGTTAACAGTTAGCACACGAGTTGGAGGTGTTCCTGAGGTTTTACCGGATGACATGATTGTGTTAGCAGAACCTGATCCAGGTGATATAGTGCAAGCAATCCAAAAGGCAATATATATGCTTCCCGAAATTGATCCTCAAGTCATGCACAATCGAATGAGGGAACTCTACAACTGGCGTGATGTTGCCAAACGGACTGAAATTGTATATGATCGTGCTTCGAAGTGCCCCAATCAAAGTCTATTAGAATCTCTATCACGATACTTGTCTTGTGGAGCATGGGCAGGCAAGCTCTTTTCCTTGGTTATGATCTTGGGTTTTTTGTTTTGGCATCTTCTGGAACTATGGCAGCCTGCAGATGATATTGAGGAGGTGCCAGATGTTATTTTTTCACACAACTGTGATGAAGAGATGTTGCAGAAATCCTAA
>Glyma13g25060.1 sequence type=predicted peptide gene model=Glyma13g25060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDSPPQKHRILMVSDFYYPNFGGVENHAYYLSQCLLKLGHKVVVVTHAYGNRSGVRYMTGSLKVYYVPWRPFCNQSTFPTLYGILPIIRTILIRERITVVHGHQTFSTLCHDALLHARIMGYKVVFTDHSLHGFGDVGSIHMNKVMQFTLADVSQAICVSHTSKENTVLRSGLAPEKVFVIPNAVDTAMFKPALERPGGLEIVVVVISRLVYRKGADLLVEVIPEVCRLHPNVRFIIGGDGPKRVRLEEMREKHSLFDRVELLGAVPHAQVRSVLISGHIFLTCSLTEAFCMAILEAASCGLLTVSTRVGGVPEVLPDDMIVLAEPDPGDIVQAIQKAIYMLPEIDPQVMHNRMRELYNWRDVAKRTEIVYDRASKCPNQSLLESLSRYLSCGAWAGKLFSLVMILGFLFWHLLELWQPADDIEEVPDVIFSHNCDEEMLQKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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