SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G11060 | AT | Annotation by Michelle Graham. TAIR10: WAPL (Wings apart-like protein regulation of heterochromatin) protein | chr1:3684568-3689537 FORWARD LENGTH=930 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2152 | KOG | Sister chromatid cohesion protein | JGI | ISS | |
| PTHR22100 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR22100:SF9 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF07814 | PFAM | Wings apart-like protein regulation of heterochromatin | JGI | ISS | |
| UniRef100_F4I7C7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WAPL (Wings apart-like protein regulation of heterochromatin) protein n=1 Tax=Arabidopsis thaliana RepID=F4I7C7_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M0C9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0C9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g25020 not represented in the dataset |
Glyma13g25020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g31400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g181800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g25020.1 sequence type=CDS gene model=Glyma13g25020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCGTCCGCACCTACGGCCGCCGCAAAGGAACCCTCTCGGGAACGTATTCGGGCTCGTCCTCTCTAAACGACGACGTTTCGGAGCCATTCAGGGATTCCTTATCTCAGGAGATTGACGACCCTCTCTGCGGCTTCGCGTTCTCCTCCCAGGACTCGTCCTCGCAGCATTGGTCCTTCTTCGATTCGGAGATCGGCGACTTCGGAAACGGCACCGGCGCAGGCGGAGCAAGGGAGTCGAAGAGGGCGAAGCGGGCGCCGGCGGAGGGGATTCCGGCGACGTCGACGCTGATGGAGGCGCAGGAGTTCGGAGAGATGATGGAGCACGTTGACGAGGTCAATTTCGCTCTCGACGGGCTCCGCAAGGGTCAGCCTCTTCGGATCAGAAGGGCAAGCTTGGTGTCGCTCTTGACAATTTGCGCCACTACGCACCAGAGAAGGCTTCTAAGAACTCAAGGGATGGCCAAGACAATAATTGATGCTGTTTTGGGCCTCACTCTTGATGATTCTCCCAGCAATCTTGCAGCTGCAACCCTTTTCTACGTGTTGACCAGTGATGGCCAAGATGATCACCTCCTTGAATCACCTGGTTCTGTTCAATTTCTGATGAAGTTGTTAAAACCAATTGTCTCCACAGCTATTAAAGACAAAGCACCAAAATTTGGCTATAAACTTTTATCATTGCGTCAGAATGATGATATTTTGAAAAATACGACTATGACGGGAAGATTGGACTCCAGTTCTGTAGAAGTTTTTTCCAGAGTTCAAGAAATTCTAGTAAATTGCAAAGAGCTGAAAACTTGTCAGAATGACAGTTGGGGGGAGAGACCAGAGTTATGCCCAAAATGGTTAGCATTGCTGACTATGGAGAAGGCTTGTCTGTCTGCCATTTCTCTTGATGAAACCAGTGGTGCAGTACGGAAGGCTGGTGGAAATTTCAAGGAAAAATTAAGGGAGCATGGAGGACTTGATGCAGTCTTTGAAGTCACCATGACTTGTCATTCAGATTTGGAGAATTGGATGAAGGATAGTTCTCTGTCTATCAAAGATTCAAGAAATGACAAACGAATCAAGAGCCTAACTTTGCTTCTCAAGTGCTTGAAGATAATGGAAAATGCTACTTTCCTAAGCAATGAGAATCAGACTCATTTGCTTGGAATGAAAAGAAAATTGAGTCCTCAGGGACCCCCAACTTCTTTTACTGAGCTGATTATAACTGTCATAAAAATCCTCTCAGATCTATGTTTACGTCGAAGTGCCTCTGCTGCATCCAATGATAACAAGACTTACGATCCCTTCTCTATGACCAGTCATGATTCTGAATTGGATCAGCTCAGAGACTATAAAGAGAATGAGACTTTATCCATCAGTTCCACTAGAAAGTACCACAGTGTGGAGAGAGCCTCTTCTGTTAAGAGTTCTAATGCTTCTCAGATCAGCCGAATATTGACATGTAATTGGTTGGAAAGTTCGCTATCCATTGCTGAAACTCCCAGCACTTCAACTACTGATTCTTATTCACTAAAGATGAGGGTCAATTCTTCCACGTCTGGGTCTTGTAGTGGTGCATCAAAGAGTTCATACTGTAAAACATCCAGGATTCAAAATAGTTCCGGGAAGAATGTTCGCTTTATGGAAGATACCCCAGTTGTAATCTTGGATGATAGCCAAGATCCCTTTGCATTTGATGAGGATGACTTTGCACCCTCTAAGTGGGATCTATTATCAGGAAAACCAAAAAAATCTCATTCTAAAAAGCATGTGGTAGCAAACAGAGAGTTTGAAAATGAATGTCAATCTCTCACCAATGTGAGCCAACAAGAATTAAGTAATGGAGACATCAATTGTTCCAGTTCTGATGTTGGTGATGAAAAAGATTCCAGCCTTCTTGCTGACTGTCTTCTTGCTGCTGTAAAGGTTCTGATGAATTTGACCAATGACAACCCCGTTGGCTGTCGGCAAATTGCTAACTATGGAGGACTGGAGACTATGTCTATGTTAATTGCCGGTCATTTTCCTTCTTTCAGCTCGTCATCGTCATCCTTTGCTCAAATAAAGGAAAATGGTGAAGGAACTACAAAAGATAATCAATCTGATAGGCATCTGACTGATCACGAGTTAGATTTCCTTGTTGCTATTCTGGGCTTGCTTGTAAACCTGGTCGAGAAGGATGGTCATAACAGATCACGGCTTGCTGCAGCCAGTGTTCATCTACCTTCCTCAGTAAGCTTGCACCAGGAGGTTCGGAAGGATGTTATTCAATTATTATGCTCCATTTTCTTGGCTAACCTGGGTGAAAGTGAAGGAGCTGGGGAAGATAAACAATTGCAACTTAATGATGAGGCAGCTGTTCTACAAGGCGAAAAAGAAGCTGAGAAAATGATTGTGGAAGCTTATTCTGCGCTGCTTCTAGCATTTCTTTCCACTGAAAGTAAGAGCATACGTGCAGCAATTGCTGACAATCTTCCAGACCAGAACTTAGCAAGTCTTGTACCTGTGTTGGACAGATTTGTGGAATTCCATCTATCATTGAACATGATTTCGCCGGAGACTCATAAAGCTGTCAGCGAGGTAATTGAATCGTGTAGAATTCGATGA
>Glyma13g25020.1 sequence type=predicted peptide gene model=Glyma13g25020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIVRTYGRRKGTLSGTYSGSSSLNDDVSEPFRDSLSQEIDDPLCGFAFSSQDSSSQHWSFFDSEIGDFGNGTGAGGARESKRAKRAPAEGIPATSTLMEAQEFGEMMEHVDEVNFALDGLRKGQPLRIRRASLVSLLTICATTHQRRLLRTQGMAKTIIDAVLGLTLDDSPSNLAAATLFYVLTSDGQDDHLLESPGSVQFLMKLLKPIVSTAIKDKAPKFGYKLLSLRQNDDILKNTTMTGRLDSSSVEVFSRVQEILVNCKELKTCQNDSWGERPELCPKWLALLTMEKACLSAISLDETSGAVRKAGGNFKEKLREHGGLDAVFEVTMTCHSDLENWMKDSSLSIKDSRNDKRIKSLTLLLKCLKIMENATFLSNENQTHLLGMKRKLSPQGPPTSFTELIITVIKILSDLCLRRSASAASNDNKTYDPFSMTSHDSELDQLRDYKENETLSISSTRKYHSVERASSVKSSNASQISRILTCNWLESSLSIAETPSTSTTDSYSLKMRVNSSTSGSCSGASKSSYCKTSRIQNSSGKNVRFMEDTPVVILDDSQDPFAFDEDDFAPSKWDLLSGKPKKSHSKKHVVANREFENECQSLTNVSQQELSNGDINCSSSDVGDEKDSSLLADCLLAAVKVLMNLTNDNPVGCRQIANYGGLETMSMLIAGHFPSFSSSSSSFAQIKENGEGTTKDNQSDRHLTDHELDFLVAILGLLVNLVEKDGHNRSRLAAASVHLPSSVSLHQEVRKDVIQLLCSIFLANLGESEGAGEDKQLQLNDEAAVLQGEKEAEKMIVEAYSALLLAFLSTESKSIRAAIADNLPDQNLASLVPVLDRFVEFHLSLNMISPETHKAVSEVIESCRIR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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