Report for Sequence Feature Glyma13g25000
Feature Type: gene_model
Chromosome: Gm13
Start: 28282489
stop: 28289076
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g25000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G14770 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:4772881-4775697 REVERSE LENGTH=938
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF35 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G7ZZ81 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7ZZ81_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI00023381C7 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023381C7 related cluster n=1 Tax=unknown RepID=UPI00023381C7
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g25000
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g25000
Paralog Evidence Comments
Glyma07g31440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g25000 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g181600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g25000
Coding sequences of Glyma13g25000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g25000.2 sequence type=CDS gene model=Glyma13g25000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCGTGCCCTCTCTCTCGTTCCCTCCTTGCCCCTCTGGAACGACCTTTTGTACGAATTCAATGCCTCTGGCTTCGTTTCTCAGGCAAAAGTGTTGTATTCTGAGATGGTCCTTTGTGGGTTGTGCCTAATGGGGTTCTGTAAGCGTGGATTGGCTGATCAGGGTTTTGGGTTGTTGTCTGAGATGGTTAAGAAGGATGTTTGTTTTGATTCGGTTACTTGTAATATACTTGCTAAGGGGTATTGCCGAATTGGATTGGTTCAATATGCTGAGTGGATTATGGGGAACTTGGTTGGTGGGGGTGTTCCATTAGATGTTGTAGGTTTGAACACATTGGTTGATGGGTATTGTGAAGCCGGGATGATGAGCCGTGCGTTGGATTTGGTGGAGGATGGTCGGAAGAATGGTGTGGAGCCTGATATCGTTACTTATAATACTTTGGTTAATGGTTTTTGTATGAGAGGGGATCTTGCGAAGGCGGAGTCTGTTGTCAATGAGATTTTGGGATTTGGGAGGGATGGGGAATCTGGTTTGTTGAATGAGTGTAGAGTTGAAACTCGGGATGGGATAAGGGATTTGCAGCCAACTGTTGTTACGTGGACGACATTAATTGCTGCGTACTGTAAGCACCGAGGAATTGATGATTCCTTTTCTCTTTATGAGCAAATGATTATGAGTGGAATCATGCCTGATGTGGTTACTTGTAGTTCTATTCTCTATGGGCTTTGCAGACATGGTAAATTAGCTGAAGCGGCAATGTTGCCGAGAGAGATGCATAATATGGGTTTAGATCCGAATCATGTCTCATACACTACAATTATTAGTGTTGGTGCATTATTAAAATCAGGGAGGGTAATGGAAGCTTTTAATCATCAAAGCCAAATGGCTGTTCGGGGCATTTCTTTTGATCTAGTTTTGTGTACAACTATGATGGATGGACTTTTCAAAGTTGGGAAATATAAAGAGGCTGAGGCAATGTTCCAAAGTATTTTAAAGCTCAATCTTGTCCCAAACTGTGTCACTTATACGGCATTGCTTGATGGTCATTGTAAGTTCGGAGACGTGGAATTTGCAGAGTCAGCGTTGCAAAAAATGGAGAAGGAACATGTTCTTCCAAATGTTATTGCCTTTTCTTCTATTATAAATGGATATGCCAAAAAAGGAATGCTCAACAAAGCAGTTGATGTGTTAAGGACAATGGTCCAAATGAATATTATGCCAAATGCTTTTGTTTTTGCTATTTTACTTGACGGCTATTATAGGGCAGGTCAACATGAGGCTGCTGCTGGTTTCTATAAGGAAATGAAATCGTGGGGATTGGAGGAAAACAATATCATATTTGATATCTTATTGAACAACTTGAAAAGATTTGGAAGCATGAGGGAAGCTGAGCCATTAATTAAAGATATTCTCTCTAAGGAAGGAAACGAGTCAGCTGCTCTTTCTATAGTACAGGAAATAACAGAGAAGGACGTGCAGTTTGATGTTGTTGCCTACAATGCTTTGACTAAGGGGCTTTTGAGGCTGGGGAAATATGAACCAAAATCTGTGTTTTCAAGAATGATAGAGTTGGGTCTGACTCCAGATTGCGTTACATATAACTCTGTAATTAACACATACTTCATACAAGGTAAAACAGAAAATGCTTTGGATCTGTTGAATGAGATGAAGAGCTATGGGGTAATGCCAAATATGGTCACTTATAACATTCTTATAGGTGGGCTTAGTAAAACTGGTGCAATTGAAAAAGCAATAGATGTTTTGCGTGAAATGCTGTTTCTTCTTAAAGCATATTCAAGGAGTAGAAAAGCAGATGCAATTTTGCAAATTCACAAGAAGCTTGTGGCTATGGGCCTCAAGCTCAACCAGACGGTGTATAACGCTCTAATCACTGTATTATGCAGATTAAGGATGACTAAAAAAGCAAATGTGGTGCTCAGGGAAATGGCAACAAAAGGAATTTCAGCTGACATTGTTACTTATAATGCTCTTATTCGTGGTTATTGTACAAGCAGCCATGCGGATAAGGCTTTTAGTACTTATTCACAGATGTTGGTGGATGGAATCTCTCCAAATATTACTACTTACAATACCCTTTTAGAAGGTCTTTCAACTGATGGTTTGATGAGAGATGCAGATAAATTAGTTAGTGAGATGAGGGGAAGAGGACTTGTCCCAAATGCAACTACTTATAACATATTGGTTTCTGGCCATGGTAGGGTTGGAAATAAACGGGATTCTATAAAACTTTATTGTGAAATGATAACCAAAGGTTTTATTCCCACAACAGGTACCTATAATGTGCTTATTCAAGATTATGCAAAAGCAGGAAAGATGCGCCAAGCTAGAGAACTTTTGAACGAGATGTTGACAAGAGGAAGAATTCCTAATTCTTCAACATACGATGTTCTAATTTGTGGATGGTGGAAATTGTCCTGTCAGCCAGAGATGGACAGGTTACTTAAACTGTCATATCAGAATGAGGCAAAAATATTGTTGAGAGAAATGTGTGAAAAAGGACATGTGCCATCTGAGAGCACTCTCATGTATATTAGTTAA
Predicted protein sequences of Glyma13g25000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g25000.2 sequence type=predicted peptide gene model=Glyma13g25000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRALSLVPSLPLWNDLLYEFNASGFVSQAKVLYSEMVLCGLCLMGFCKRGLADQGFGLLSEMVKKDVCFDSVTCNILAKGYCRIGLVQYAEWIMGNLVGGGVPLDVVGLNTLVDGYCEAGMMSRALDLVEDGRKNGVEPDIVTYNTLVNGFCMRGDLAKAESVVNEILGFGRDGESGLLNECRVETRDGIRDLQPTVVTWTTLIAAYCKHRGIDDSFSLYEQMIMSGIMPDVVTCSSILYGLCRHGKLAEAAMLPREMHNMGLDPNHVSYTTIISVGALLKSGRVMEAFNHQSQMAVRGISFDLVLCTTMMDGLFKVGKYKEAEAMFQSILKLNLVPNCVTYTALLDGHCKFGDVEFAESALQKMEKEHVLPNVIAFSSIINGYAKKGMLNKAVDVLRTMVQMNIMPNAFVFAILLDGYYRAGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRFGSMREAEPLIKDILSKEGNESAALSIVQEITEKDVQFDVVAYNALTKGLLRLGKYEPKSVFSRMIELGLTPDCVTYNSVINTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLSKTGAIEKAIDVLREMLFLLKAYSRSRKADAILQIHKKLVAMGLKLNQTVYNALITVLCRLRMTKKANVVLREMATKGISADIVTYNALIRGYCTSSHADKAFSTYSQMLVDGISPNITTYNTLLEGLSTDGLMRDADKLVSEMRGRGLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYNVLIQDYAKAGKMRQARELLNEMLTRGRIPNSSTYDVLICGWWKLSCQPEMDRLLKLSYQNEAKILLREMCEKGHVPSESTLMYIS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
