Glyma13g24930 - SoyBase

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Report for Sequence Feature Glyma13g24930

Feature Type:	gene_model
Chromosome:	Gm13
Start:	28214798
stop:	28219329
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g24930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G47160	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr3:17360238-17361879 REVERSE LENGTH=245	SoyBase	E_val: 3.00E-124	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1039	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
KOG4172	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR15067	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR15067:SF7	Panther	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7ZZ98	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7ZZ98_MEDTR	SoyBase	E_val: 2.00E-162	ISS
UniRef100_I1M0B9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0B9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g24930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g24930 not represented in the dataset	Glyma13g24930 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g24930

Paralog	Evidence	Comments
Glyma07g31510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g24930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g180900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g24930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g24930

Limit To All Plant Sequences

>Glyma13g24930.2   sequence type=transcript   gene model=Glyma13g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGCGTGTCCTGACAAGCTCACCGGCTTGGCTTTCAAGAACAGCATAGAAGCAACACGAAGCACTCTCTTTCTCTCTCCTTTCTCTTTCTCTTTCTCTTCTCTCTTCACTATGTGTGACTCTCTCTCTCACACAAACTAGAGCGAGAAATATTATAGTAGCTCTGCGTTTTTGGGGTATCATTATTCAACCACCCATTTTCTCTCTTCTTCTTCTTCCATTGAGAAAATTCTCTTTCATCGTGTGTGATCGGTGAGATGTACGTAGCTTCCATGCGCAAGTCTTTCAAGGACTCCTTGAAAGTCCTTGAAGCTGATATCCAGCACGCCAATACCCTGGCTTCAGATTTTCCAAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTTTTCTTGGTGCAATGGACAGATTGTCATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGCTGTCATATATCCCTCTTTATTGCAACTTGAAAAAGGTGTCACTGATACCGAGGATAAGAAGCAAAAGGTTGTGTGCATGGAGAGGTACCGTAGAAGAGATGATGAGGAGTATAGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATAGTAAGATTGTGCTTCCCAACTGCAATCATGCCATGTGCTTGAAATGTTACAGAGAATGGCGAACGATATCACAATCATGCCCATTTTGCCGTGACAGTCTCAAGAGAGTAAACTCAGGCGATCTCTGGGTATTCACTGATAGAAGGGATGTGGTAGACATGGCAACAGTGACTAGGGAGAATCTCAGAAGGCTTTTCATGTACATAGATAAGTTGCCTCTGATTGTTCCTGACTCCCTTTTTGACACATACGACTCTCACATAAGGTAAGTGATTGCAACAGAACAGATTTTAATGTATGCTGTTGTCTTGGATGGATAGAGCTATATTCCTCTCCACTTCCAAGTTAGTCACATAAAAGCCCAAGCCCAAACCCAATCAGAGGCTAATTGAGTTCGAATTATATATAGAGTCGCAGTACTTGCTTCCCACTTTTGCTGCCAGAAGTATCCAGCCCTGTGTTAATTGTGGGTTGGTGGTGAAGTTGAGATGGTAAATTGTATCTATCTAGTTAGCTCTTTTGTATATCCCTGTACAGATCGAATTAATCACTTCTTATTAACAAGAGATTTGCACATTTGGTTCTTGTCATTTAAGTGTGAATCTCTTGAGGAAAAAAAAATCTTTTACTTTTCATCATCAATGAATGTATTTAACGGAATGTAATAGCCTCATAGGTGCTTTTTCTATGTAGTATCTATCTGTATTCGCTATATTTCCTCAAGGTCCTCTTAATAGTAACTACTATTATGTTTTATATTATTTAAGCACTATAGTCTATAATGCTGTTTCATTTTTTTTTATAATTCTTTTTTCTTGGTTTTTCATTTATCTTTCTTTATTACGGT

>Glyma13g24930.3   sequence type=transcript   gene model=Glyma13g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGCGTGTCCTGACAAGCTCACCGGCTTGGCTTTCAAGAACAGCATAGAAGCAACACGAAGCACTCTCTTTCTCTCTCCTTTCTCTTTCTCTTTCTCTTCTCTCTTCACTATGTGTGACTCTCTCTCTCACACAAACTAGAGCGAGAAATATTATAGTAGCTCTGCGTTTTTGGGGTATCATTATTCAACCACCCATTTTCTCTCTTCTTCTTCTTCCATTGAGAAAATTCTCTTTCATCGTGTGTGATCGGTGAGATGTACGTAGCTTCCATGCGCAAGTCTTTCAAGGACTCCTTGAAAGTCCTTGAAGCTGATATCCAGCACGCCAATACCCTGGCTTCAGATTTTCCAAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTTTTCTTGGTGCAATGGACAGATTGTCATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGGTCTATGTGGATGGGACAACCACCATGTCTACACATGAAAGAAAAGCAAGTATTAGAGAATTCTATGCTGTCATATATCCCTCTTTATTGCAACTTGAAAAAGGTGTCACTGATACCGAGGATAAGAAGCAAAAGGTTGTGTGCATGGAGAGGTACCGTAGAAGAGATGATGAGGAGTATAGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATAGTAAGATTGTGCTTCCCAACTGCAATCATGCCATGTGCTTGAAATGTTACAGAGAATGGTGTGCTTGCAGCATCGGCACCATGCATATGAAGGCGAACGATATCACAATCATGCCCATTTTGCCGTGACAGTCTCAAGAGAGTAAACTCAGGCGATCTCTGGGTATTCACTGATAGAAGGGATGTGGTAGACATGGCAACAGTGACTAGGGAGAATCTCAGAAGGCTTTTCATGTACATAGATAAGTTGCCTCTGATTGTTCCTGACTCCCTTTTTGACACATACGACTCTCACATAAGGTAAGTGATTGCAACAGAACAGATTTTAATGTATGCTGTTGTCTTGGATGGATAGAGCTATATTCCTCTCCACTTCCAAGTTAGTCACATAAAAGCCCAAGCCCAAACCCAATCAGAGGCTAATTGAGTTCGAATTATATATAGAGTCGCAGTACTTGCTTCCCACTTTTGCTGCCAGAAGTATCCAGCCCTGTGTTAATTGTGGGTTGGTGGTGAAGTTGAGATGGTAAATTGTATCTATCTAGTTAGCTCTTTTGTATATCCCTGTACAGATCGAATTAATCACTTCTTATTAACAAGAGATTTGCACATTTGGTTCTTGTCATTTAAGTGTGAATCTCTTGAGGAAAAAAAAATCTTTTACTTTTCATCATCAATGAATGTATTTAACGGAATGTAATAGCCTCATAGGTGCTTTTTCTATGTAGTATCTATCTGTATTCGCTATATTTCCTCAAGGTCCTCTTAATAGTAACTACTATTATGTTTTATATTATTTAAGCACTATAGTCTATAATGCTGTTTCATTTTTTTTTATAATTCTTTTTTCTTGGTTTTTCATTTATCTTTCTTTATTACGGT

>Glyma13g24930.4   sequence type=transcript   gene model=Glyma13g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGCGTGTCCTGACAAGCTCACCGGCTTGGCTTTCAAGAACAGCATAGAAGCAACACGAAGCACTCTCTTTCTCTCTCCTTTCTCTTTCTCTTTCTCTTCTCTCTTCACTATGTGTGACTCTCTCTCTCACACAAACTAGAGCGAGAAATATTATAGTAGCTCTGCGTTTTTGGGGTATCATTATTCAACCACCCATTTTCTCTCTTCTTCTTCTTCCATTGAGAAAATTCTCTTTCATCGTGTGTGATCGGTGAGATGTACGTAGCTTCCATGCGCAAGTCTTTCAAGGACTCCTTGAAAGTCCTTGAAGCTGATATCCAGCACGCCAATACCCTGGCTTCAGATTTTCCAAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTTTTCTTGGTGCAATGGACAGATTGTCATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGCTGTCATATATCCCTCTTTATTGCAACTTGAAAAAGGTGTCACTGATACCGAGGATAAGAAGCAAAAGGTTGTGTGCATGGAGAGGTACCGTAGAAGAGATGATGAGGAGTATAGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATAGTAAGATTGTGCTTCCCAACTGCAATCATGCCATGTGCTTGAAATGTTACAGAGAATGGTGTGCTTGCAGCATCGGCACCATGCATATGAAGGCGAACGATATCACAATCATGCCCATTTTGCCGTGACAGTCTCAAGAGAGTAAACTCAGGCGATCTCTGGGTATTCACTGATAGAAGGGATGTGGTAGACATGGCAACAGTGACTAGGGAGAATCTCAGAAGGCTTTTCATGTACATAGATAAGTTGCCTCTGATTGTTCCTGACTCCCTTTTTGACACATACGACTCTCACATAAGGTAAGTGATTGCAACAGAACAGATTTTAATGTATGCTGTTGTCTTGGATGGATAGAGCTATATTCCTCTCCACTTCCAAGTTAGTCACATAAAAGCCCAAGCCCAAACCCAATCAGAGGCTAATTGAGTTCGAATTATATATAGAGTCGCAGTACTTGCTTCCCACTTTTGCTGCCAGAAGTATCCAGCCCTGTGTTAATTGTGGGTTGGTGGTGAAGTTGAGATGGTAAATTGTATCTATCTAGTTAGCTCTTTTGTATATCCCTGTACAGATCGAATTAATCACTTCTTATTAACAAGAGATTTGCACATTTGGTTCTTGTCATTTAAGTGTGAATCTCTTGAGGAAAAAAAAATCTTTTACTTTTCATCATCAATGAATGTATTTAACGGAATGTAATAGCCTCATAGGTGCTTTTTCTATGTAGTATCTATCTGTATTCGCTATATTTCCTCAAGGTCCTCTTAATAGTAACTACTATTATGTTTTATATTATTTAAGCACTATAGTCTATAATGCTGTTTCATTTTTTTTTATAATTCTTTTTTCTTGGTTTTTCATTTATCTTTCTTTATTACGGT

Coding sequences of Glyma13g24930

Limit To All Plant Sequences

>Glyma13g24930.1   sequence type=CDS   gene model=Glyma13g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACGTAGCTTCCATGCGCAAGTCTTTCAAGGACTCCTTGAAAGTCCTTGAAGCTGATATCCAGCACGCCAATACCCTGGCTTCAGATTTTCCAAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTTTTCTTGGTGCAATGGACAGATTGTCATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGGTCTATGTGGATGGGACAACCACCATGTCTACACATGAAAGAAAAGCAAGTATTAGAGAATTCTATGCTGTCATATATCCCTCTTTATTGCAACTTGAAAAAGGTGTCACTGATACCGAGGATAAGAAGCAAAAGGTTGTGTGCATGGAGAGGTACCGTAGAAGAGATGATGAGGAGTATAGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATAGTAAGATTGTGCTTCCCAACTGCAATCATGCCATGTGCTTGAAATGTTACAGAGAATGGCGAACGATATCACAATCATGCCCATTTTGCCGTGACAGTCTCAAGAGAGTAAACTCAGGCGATCTCTGGGTATTCACTGATAGAAGGGATGTGGTAGACATGGCAACAGTGACTAGGGAGAATCTCAGAAGGCTTTTCATGTACATAGATAAGTTGCCTCTGATTGTTCCTGACTCCCTTTTTGACACATACGACTCTCACATAAGGTAA

>Glyma13g24930.2   sequence type=CDS   gene model=Glyma13g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTTTTCTTGGTGCAATGGACAGATTGTCATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGCTGTCATATATCCCTCTTTATTGCAACTTGAAAAAGGTGTCACTGATACCGAGGATAAGAAGCAAAAGGTTGTGTGCATGGAGAGGTACCGTAGAAGAGATGATGAGGAGTATAGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATAGTAAGATTGTGCTTCCCAACTGCAATCATGCCATGTGCTTGAAATGTTACAGAGAATGGCGAACGATATCACAATCATGCCCATTTTGCCGTGACAGTCTCAAGAGAGTAAACTCAGGCGATCTCTGGGTATTCACTGATAGAAGGGATGTGGTAGACATGGCAACAGTGACTAGGGAGAATCTCAGAAGGCTTTTCATGTACATAGATAAGTTGCCTCTGATTGTTCCTGACTCCCTTTTTGACACATACGACTCTCACATAAGGTAA

>Glyma13g24930.3   sequence type=CDS   gene model=Glyma13g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACGTAGCTTCCATGCGCAAGTCTTTCAAGGACTCCTTGAAAGTCCTTGAAGCTGATATCCAGCACGCCAATACCCTGGCTTCAGATTTTCCAAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTTTTCTTGGTGCAATGGACAGATTGTCATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGGTCTATGTGGATGGGACAACCACCATGTCTACACATGAAAGAAAAGCAAGTATTAGAGAATTCTATGCTGTCATATATCCCTCTTTATTGCAACTTGAAAAAGGTGTCACTGATACCGAGGATAAGAAGCAAAAGGTTGTGTGCATGGAGAGGTACCGTAGAAGAGATGATGAGGAGTATAGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATAGTAAGATTGTGCTTCCCAACTGCAATCATGCCATGTGCTTGAAATGTTACAGAGAATGGTGTGCTTGCAGCATCGGCACCATGCATATGAAGGCGAACGATATCACAATCATGCCCATTTTGCCGTGA

>Glyma13g24930.4   sequence type=CDS   gene model=Glyma13g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTTTTCTTGGTGCAATGGACAGATTGTCATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGCTGTCATATATCCCTCTTTATTGCAACTTGAAAAAGGTGTCACTGATACCGAGGATAAGAAGCAAAAGGTTGTGTGCATGGAGAGGTACCGTAGAAGAGATGATGAGGAGTATAGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATAGTAAGATTGTGCTTCCCAACTGCAATCATGCCATGTGCTTGAAATGTTACAGAGAATGGTGTGCTTGCAGCATCGGCACCATGCATATGAAGGCGAACGATATCACAATCATGCCCATTTTGCCGTGA

Predicted protein sequences of Glyma13g24930

Limit To All Plant Sequences

>Glyma13g24930.1   sequence type=predicted peptide   gene model=Glyma13g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYVASMRKSFKDSLKVLEADIQHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLEKGVTDTEDKKQKVVCMERYRRRDDEEYRQSSDIDIEREDECGICMDMNSKIVLPNCNHAMCLKCYREWRTISQSCPFCRDSLKRVNSGDLWVFTDRRDVVDMATVTRENLRRLFMYIDKLPLIVPDSLFDTYDSHIR*

>Glyma13g24930.2   sequence type=predicted peptide   gene model=Glyma13g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSDENVIQSSCTPVSFLGAMDRLSSCWSPWTVKNPNLQAVIYPSLLQLEKGVTDTEDKKQKVVCMERYRRRDDEEYRQSSDIDIEREDECGICMDMNSKIVLPNCNHAMCLKCYREWRTISQSCPFCRDSLKRVNSGDLWVFTDRRDVVDMATVTRENLRRLFMYIDKLPLIVPDSLFDTYDSHIR*

>Glyma13g24930.3   sequence type=predicted peptide   gene model=Glyma13g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYVASMRKSFKDSLKVLEADIQHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLEKGVTDTEDKKQKVVCMERYRRRDDEEYRQSSDIDIEREDECGICMDMNSKIVLPNCNHAMCLKCYREWCACSIGTMHMKANDITIMPILP*

>Glyma13g24930.4   sequence type=predicted peptide   gene model=Glyma13g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSDENVIQSSCTPVSFLGAMDRLSSCWSPWTVKNPNLQAVIYPSLLQLEKGVTDTEDKKQKVVCMERYRRRDDEEYRQSSDIDIEREDECGICMDMNSKIVLPNCNHAMCLKCYREWCACSIGTMHMKANDITIMPILP*

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