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Report for Sequence Feature Glyma13g24910

Feature Type:gene_model
Chromosome:Gm13
Start:28200360
stop:28203878
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g24910
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G21720AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 2692 Blast hits to 975 proteins in 186 species: Archae - 4; Bacteria - 460; Metazoa - 658; Fungi - 93; Plants - 1089; Viruses - 100; Other Eukaryotes - 288 (source: NCBI BLink). | chr4:11542561-11544274 FORWARD LENGTH=139 SoyBaseE_val: 3.00E-52ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1M0B7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0B7_SOYBN SoyBaseE_val: 8.00E-96ISS

Expression Patterns of Glyma13g24910
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g24910
ParalogEvidenceComments
Glyma07g31530 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g24910 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g180700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g24910
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g24910
>Glyma13g24910.1   sequence type=CDS   gene model=Glyma13g24910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATACCGCAACAGTGGGCTTCTCCATGTGGAAACCAATGCACCAATAAATACGCTGCCCTAACCAAAATCCCATGGCGAGTATTCTGCAAAAAGGGTTGCGACTCAGATGGAGAGACATGGGAAGAATGTTTGGAGGACTGCAATCAAATATGCTACAAGGATCCCGTACTAAAGGACCAGCAGTGGAGTGCTTATATTGATCGTTCCCCTGGAGCTGCCAGTTATTCAGAGGAATGTTTTCATGCATGTGTATCTGGCTGCGGTTACAAGTTTGAGGTTAAACCAGAGGAAGCTGATAAAGTCAGTCCTAACAGGCAACTGAAGCCGGAGACCAAGCCGAAGCCACAACCAAAGCCAAAGCCACAACCTGTATGCCCCATTGACCCGCCAAGTGATATACCTGATACTTCTGCATAG
Predicted protein sequences of Glyma13g24910
>Glyma13g24910.1   sequence type=predicted peptide   gene model=Glyma13g24910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIPQQWASPCGNQCTNKYAALTKIPWRVFCKKGCDSDGETWEECLEDCNQICYKDPVLKDQQWSAYIDRSPGAASYSEECFHACVSGCGYKFEVKPEEADKVSPNRQLKPETKPKPQPKPKPQPVCPIDPPSDIPDTSA*






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