SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G65070 | AT | Annotation by Michelle Graham. TAIR10: DNA mismatch repair protein MutS, type 2 | chr1:24173047-24176244 REVERSE LENGTH=876 | SoyBase | E_val: 2.00E-62 | ISS |
| GO:0006298 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mismatch repair | SoyBase | N/A | ISS |
| GO:0045005 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of fidelity involved in DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003684 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0030983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mismatched DNA binding | SoyBase | N/A | ISS |
| PTHR11361 | Panther | DNA MISMATCH REPAIR MUTS RELATED PROTEINS | JGI | ISS | |
| PTHR11361:SF14 | Panther | DAN MISMATCH REPAIR PROTEIN MSH8 | JGI | ISS | |
| PF00488 | PFAM | MutS domain V | JGI | ISS | |
| UniRef100_G7ZZ93 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: MutS2 family protein n=1 Tax=Medicago truncatula RepID=G7ZZ93_MEDTR | SoyBase | E_val: 6.00E-91 | ISS |
| UniRef100_UPI0002338065 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338065 related cluster n=1 Tax=unknown RepID=UPI0002338065 | SoyBase | E_val: 1.00E-107 | ISS |
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Glyma13g24901 not represented in the dataset |
Glyma13g24901 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g31550 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g180600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g24901.1 sequence type=CDS gene model=Glyma13g24901 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAATTGTTGGTGGAACTGATCCTTCAGAAGGTGTTGCAATATTTGAAGGATCGTGCTAACTTGGCTGTTGTAACCACTCATTATGCTGATCTAAGTAGTATGAAGGAAACGGATACCCGTTTTGACAATGCAACAATGGAATTTTCACTTGAAACGTTACAACCAACTTATAGAATCCTCTGGGGATGTACTGGTGATTCAAATGCATTAAGCATAGCAGGATCTATTGGCTTTGATAGAAATATAATTGATCGTGCACAAAAATGGGTAGAGAAGTTTCAATCAGAACAACAGCAAGAGCGGAGAGGAATGCTCTATCGGTCATTACAGGAGGAAAGAAATCGGTTAAAGGCTCAGGTTGAAAAGGCTGCATCCATTCATGCAGAAATTATGAGCGTTCACAATGAGATCCAAGGGGAGGCAGAAGACCTTGATCAACGTGAGATGGAACTTATGGCAAAGGAAACACAACAGGTTCAACACGAGCTAGAGCATGCAAAATCTCAGATGGAAACTGTGATACAGAAATTTGAGAAGCGACTCAGAATTTCTGGTATCAACTCAATTCTCTTATTAGAGAATCTGAATCTGCAATTGCCTCCATTGTAA
>Glyma13g24901.1 sequence type=predicted peptide gene model=Glyma13g24901 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLLVELILQKVLQYLKDRANLAVVTTHYADLSSMKETDTRFDNATMEFSLETLQPTYRILWGCTGDSNALSIAGSIGFDRNIIDRAQKWVEKFQSEQQQERRGMLYRSLQEERNRLKAQVEKAASIHAEIMSVHNEIQGEAEDLDQREMELMAKETQQVQHELEHAKSQMETVIQKFEKRLRISGINSILLLENLNLQLPPL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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