SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G04950 | AT | Annotation by Michelle Graham. TAIR10: thioredoxin family protein | chr4:2517882-2519924 REVERSE LENGTH=488 | SoyBase | E_val: 0 | ISS |
| GO:0000280 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear division | SoyBase | N/A | ISS |
| GO:0007000 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleolus organization | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
| GO:0045454 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0072593 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reactive oxygen species metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0015035 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity | SoyBase | N/A | ISS |
| KOG0911 | KOG | Glutaredoxin-related protein | JGI | ISS | |
| PTHR10293 | Panther | GLUTAREDOXIN | JGI | ISS | |
| PTHR10293:SF16 | Panther | GLUTAREDOXIN | JGI | ISS | |
| PF00085 | PFAM | Thioredoxin | JGI | ISS | |
| PF00462 | PFAM | Glutaredoxin | JGI | ISS | |
| UniRef100_G7ZZ90 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Monothiol glutaredoxin-S17 n=1 Tax=Medicago truncatula RepID=G7ZZ90_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M0B5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0B5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g24880 not represented in the dataset |
Glyma13g24880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g180400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g24880.1 sequence type=CDS gene model=Glyma13g24880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGGATCAGTGAGGGACGTGAAGTCGAAGGGCGAGGTCGACGAGGTGGTGGCGAGTGGCTCTCCGGTTATCCTCCACTTCTGGGCGTCGTGGTGCGAAGCTTCCAAGCACATGGACCAACTCTTCTCTCACCTTTCCACTGATTTCCCCAACGCCCGCTTCTTAAGGGTCGAGGCCGAAGAGCAACCCGAGATTTCTGAGGCTTACTCCGTCTCCGCTGTTCCTTTCTTTGCCTTCTGCAAGGATGGGAAGACCTTTGATACATTGGAGGGAGCTGATCCGTCAAGCTTAGCCAATAAGGTTGCTAAAGTAGCAGGCTCAATTAACCCTGGAGAATCTGCATCTCCTGCCAGTCTTGGGATGGCTGCAGGGGCTTCTGTTCTTGAAACGGTGAAAGAATTAGCAAAAGACAATGATTCTTCAAAGGAGAAAAATCAAGTTCAACCAGGGCTTAGTGGTCCTCTGAAAAAGAGAATTCAGCAGCTTGTTGACTCTAATCCTGTCATGCTTTTCATGAAAGGAACTCCTGAAGAGCCAAAATGTGGATTTAGCAGGAAAGTTGTTGTTGTGTTGAACGAAGAGAGAGTCAAGTTTGGAAGTTTTGATGTCCTATCAGACTCAGAGGTTCGTGAAGGCTTGAAGAAGTTTTCCAATTGGCCCACATTTCCTCAGCTTTACTGTAAAGGAGAACTTCTTGGTGGGTGTGACATAGCAATTGCTATGCATGAGAGTGGGGAACTGAAGGAAGTTTTTAAAGATCATGGAATTGATACTACTAATGAAGCAAAAGAGAAAGAATCAGGAAACGGCAAAGGTGGCATCTCAAAATCTACTGATTTGAGTACAACCTTATCCTCTCGTCTGGAAAGCCTGGTAAATTCAAGTGCAGTTATGCTGTTTATGAAAGGAAAGCCAGATGAACCTAAGTGTGGTTTCAGTAGGAAGGTAGTTGAAATTCTCCAGCAAGAAAATGTTCCCTTTGAGAGTTTTGACATTCTTACTGATGAAGAAGTTCGTCAAGGGCTTAAGGTTTATTCAAACTGGTCCAGTTATCCTCAACTGTATATCAAGGGTGAGCTTATTGGTGGATCAGATATTGTGTTGGAGATGCAAAAAAGCGGAGAACTTAGGAAGAATTTACACGAGAAAGGGATTCTTCCTGCAGAGACCATTCAAGATCGACTGAAGAATTTGATTGCCTCGTCCCCTGTGATGCTGTTCATGAAGGGTACCCCAGATGCACCAAGATGTGGTTTTAGTTCCAGAGTTGCTGATGCCCTTCGACAAGAGGGCTTGAATTTTGGGTCCTTTGATATATTGACTGATGAGGAAGTGAGACAGGGATTGAAGGTATACTCAAATTGGCCAACCTATCCTCAACTCTACTACAAAAGTGAGCTGATTGGTGGTCATGATATTGTGATGGAGCTGCGAAATAATGGGGAGCTGAAGTCGACTTTATCTGAGTAG
>Glyma13g24880.1 sequence type=predicted peptide gene model=Glyma13g24880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGSVRDVKSKGEVDEVVASGSPVILHFWASWCEASKHMDQLFSHLSTDFPNARFLRVEAEEQPEISEAYSVSAVPFFAFCKDGKTFDTLEGADPSSLANKVAKVAGSINPGESASPASLGMAAGASVLETVKELAKDNDSSKEKNQVQPGLSGPLKKRIQQLVDSNPVMLFMKGTPEEPKCGFSRKVVVVLNEERVKFGSFDVLSDSEVREGLKKFSNWPTFPQLYCKGELLGGCDIAIAMHESGELKEVFKDHGIDTTNEAKEKESGNGKGGISKSTDLSTTLSSRLESLVNSSAVMLFMKGKPDEPKCGFSRKVVEILQQENVPFESFDILTDEEVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELRKNLHEKGILPAETIQDRLKNLIASSPVMLFMKGTPDAPRCGFSSRVADALRQEGLNFGSFDILTDEEVRQGLKVYSNWPTYPQLYYKSELIGGHDIVMELRNNGELKSTLSE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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