SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G04910 | AT | Annotation by Michelle Graham. TAIR10: AAA-type ATPase family protein | chr4:2489696-2495666 REVERSE LENGTH=742 | SoyBase | E_val: 0 | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG0741 | KOG | AAA+-type ATPase | JGI | ISS | |
| PTHR23078 | Panther | VESICULAR-FUSION PROTEIN NSF | JGI | ISS | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | ISS | |
| PF02359 | PFAM | Cell division protein 48 (CDC48), N-terminal domain | JGI | ISS | |
| PF02933 | PFAM | Cell division protein 48 (CDC48), domain 2 | JGI | ISS | |
| UniRef100_I1M0B2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0B2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q40495 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: N-ethylmaleimide sensitive fusion protein n=1 Tax=Nicotiana tabacum RepID=Q40495_TOBAC | SoyBase | E_val: 0 | ISS |
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Glyma13g24850 not represented in the dataset |
Glyma13g24850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g31570 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g180100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g24850.1 sequence type=CDS gene model=Glyma13g24850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCGGCTTATCGTCTTCGTCTTCCTCTGCGTCCAACATGAGAGTGACCAACACGCCTGCCAGCGACCTCGCCCTCACCAACCTCGCCTTCTGTTCCCCCTCCGATCTCCGCAATTTCGCCGTCCCCGGTCACAACAACCTCTACCTCGCCGCCGTCGCCGATTCCTTCGTCTTATCTCTCTCTGCTCATGACAACATAGGCAGCGGCCAGATTGCGTTGAATGTCGTTCAACGCCGGTGTGTCAAAGTTTCTTCCGGCGATTCCGTGCAAGTGAGCCGATTTGTGCCCCCTGAAGACTTCAACCTCGCACTGCTAACTCTTGATTTGGAATTTGTTAAAAAGGGGAGTAAGAGTGAACAGATTGATGCTGTTCTACTGGCTAAGCAACTTCGGAAGAGATTTATGAACCAGGTTATGACTGTGGGGCAGAAAGTATTATTTGAGTATCATGGAAATAATTATAGCTTTACTGTCAGTAATGCTGCTGTTGAGGGCCAAGAAAAGTCTAATTCTCTTGAAAGAGGGATGATTTCAGATGATACATACATTGTTTTTGAAACATCACGTGATAGTGGAATTAAGATTGTCAATCAACGTGAGGGTGCCACTAGCAACATTTTCAAGCAGAAAGAATTTAACCTTCAGTCGCTAGGTATTGGTGGCCTGAGTGCAGAATTTGCAGATATATTTCGAAGAGCTTTCGCCTCTCGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGAATCAAGCATGTGAAGGGCATGCTTCTTTATGGGCCACCTGGAACTGGAAAGACACTTATGGCACGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGTCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGAGACCTTTTTGCTGATGCTGAACAAGATCAGAGGACCCGAGGGGATGAAAGTGATTTGCATGTTATAATCTTCGATGAAATTGATGCTATTTGCAAGTCAAGAGGTTCAACTCGAGATGGTACTGGAGTTCATGATAGCATTGTAAATCAGCTTCTTACTAAGATAGATGGTGTGGAGTCACTAAATAATGTTTTACTTATTGGAATGACTAACAGAAAGGACATGCTTGATGAAGCTCTCTTAAGACCAGGGAGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCTGACGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAAATGAAAGAGAATTCTTTTCTAGCTGCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACGAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCTGTCTCATATGCTTTAAATAGACAATTGAGTCTAGAGGATCTCACTAAGCCAGTGGAGGAAGAGAACATTAAGGTTACAATGGATGACTTTTTGAATGCACTCCATGAAGTTACTTCTGCATTTGGAGCTTCAACTGATGATCTTGAAAGATGCAGACTCCATGGCATTGTGGAGTGTGGTGATCGACATAAGCACATTTATCAAAGAACAATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTCACTTGTCTCCTTGAAGGTTCCCGTGGAAGTGGTAAAACTGCACTTTCAGCTACTGTTGGTGTTGACAGTGACTTCCCATATGTCAAGATAGTTTCAGCTGAATCAATGATTGGTCTACATGAGAGCACCAAATGTGCACAGATTATTAAGGTTTTTGAGGATGCATACAAATCACCATTGAGTGTCATCATTCTTGATGACATTGAGAGATTATTGGAGTATGTGCCCATTGGTTCTCGATTTTCAAACTTTATTTCTCAGACACTACTGGTGCTGCTTAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGGTTATTGGCACAACAAGTGAACTAGATTTCTTGGAATCAATTGGATTTTGTGATACCTTCTCTGTTACTTACCATATTCCTACATTGAACACAAAGGATGCAAAGAAGGTCCTAGAACAATTGAACGTGTTTTCTGATGAAGATATTGATTCTGCTGCAGAGGCATTGAATGATATGCCTATCAGAAAGCTATACATGTTGATTGAGATGGCAGCGCAAGGGGAGCAAGGTGGATCTGCAGAAGCCATCTTTTCTGGCAAAGAGAAGATTAATATCGCTCATTTCTATGATTGCCTCCAGGATGTTGTTAGATAA
>Glyma13g24850.1 sequence type=predicted peptide gene model=Glyma13g24850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFGLSSSSSSASNMRVTNTPASDLALTNLAFCSPSDLRNFAVPGHNNLYLAAVADSFVLSLSAHDNIGSGQIALNVVQRRCVKVSSGDSVQVSRFVPPEDFNLALLTLDLEFVKKGSKSEQIDAVLLAKQLRKRFMNQVMTVGQKVLFEYHGNNYSFTVSNAAVEGQEKSNSLERGMISDDTYIVFETSRDSGIKIVNQREGATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAADVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKPVEEENIKVTMDDFLNALHEVTSAFGASTDDLERCRLHGIVECGDRHKHIYQRTMLLVEQVKVSKGSPLVTCLLEGSRGSGKTALSATVGVDSDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIILDDIERLLEYVPIGSRFSNFISQTLLVLLKRLPPKGKKLMVIGTTSELDFLESIGFCDTFSVTYHIPTLNTKDAKKVLEQLNVFSDEDIDSAAEALNDMPIRKLYMLIEMAAQGEQGGSAEAIFSGKEKINIAHFYDCLQDVVR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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