SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G30930 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal protein L21 | chr4:15050170-15051630 REVERSE LENGTH=270 | SoyBase | E_val: 6.00E-73 | ISS |
| GO:0000741 | GO-bp | Annotation by Michelle Graham. GO Biological Process: karyogamy | SoyBase | N/A | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0009553 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac development | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double fertilization forming a zygote and endosperm | SoyBase | N/A | ISS |
| GO:0016572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone phosphorylation | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG1686 | KOG | Mitochondrial/chloroplast ribosomal L21 protein | JGI | ISS | |
| PTHR21349 | Panther | 50S RIBOSOMAL PROTEIN L21 | JGI | ISS | |
| PF00829 | PFAM | Ribosomal prokaryotic L21 protein | JGI | ISS | |
| UniRef100_G7KWG9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L21 n=2 Tax=Medicago truncatula RepID=G7KWG9_MEDTR | SoyBase | E_val: 1.00E-92 | ISS |
| UniRef100_I1M0A7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M0A7_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma13g24790 not represented in the dataset |
Glyma13g24790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g31650 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g179500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g24790.1 sequence type=CDS gene model=Glyma13g24790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAGTAGGAGGTGTCTGCGAGCGTTAACGCAAAAAACGACACCGTTTCTCTTCCGAAACGCATCCTCTCTCCGCTCACTCACCGTGCCTCCGTTTCCCAACGCCAACGCTTCTTCCCCCGTTTTCACCGTACGCGCCTCTGTCTTCGCGCAATGGCCCCACCTCCGCTATTTCTCTTCCGAGAAAAAAGACGACCACAGCGACGAAGACGATGATGGCGATGAGGATTACGATGATGAAGAAGAGGATTATGTTGATGACGACGACGATGATGACGTCCCTGTGTCGAGAGGGAAAAAAGTGTACACTGCGGAGGAGAAGGAAGCGGAAGCCGCGGCAATTGGGTACAGAGTAGTGGGTCCCCTTCAAAAGGACGAAGATAGCGTTTTTAAGCCTTACGAGCCTGTTTTTGCTGTTGTTCAGATTGGTTCGCACCAGTTTAAAGTAAGCAACCGAGACAGCATTTTCACTGAAAGATTGAAGTTTTGTGAAGTGAATGACAAGTTGATTCTGAACAAAGTTCTATTGCTTGGCTCTGCTAGTCAGACAATTATCGGCAGACCTATAGTACCAGATGCAGCTGTTCATGCTGTTGTTGAGGAGCATGCACTTGATGCAAAGGTAATTATTTTTAAGAAAAAGAGAAGAAAAAATTACCGAAGAACCAAAGGACATCGTCAGGAGTTGACTAAGTTAAGGATAACTGATATTCAAGGAATTGAGAAACCTCAAAATGTATTGCCTGAAAAACCTCCAAAACCTGCTAAGAAAGAAAAGGAAAAAGTTGCAGTTACAGCTTAA
>Glyma13g24790.1 sequence type=predicted peptide gene model=Glyma13g24790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASRRCLRALTQKTTPFLFRNASSLRSLTVPPFPNANASSPVFTVRASVFAQWPHLRYFSSEKKDDHSDEDDDGDEDYDDEEEDYVDDDDDDDVPVSRGKKVYTAEEKEAEAAAIGYRVVGPLQKDEDSVFKPYEPVFAVVQIGSHQFKVSNRDSIFTERLKFCEVNDKLILNKVLLLGSASQTIIGRPIVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRITDIQGIEKPQNVLPEKPPKPAKKEKEKVAVTA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
