Report for Sequence Feature Glyma13g24760
Feature Type: gene_model
Chromosome: Gm13
Start: 28081172
stop: 28083910
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g24760
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G32480 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF506) | chr4:15676488-15677776 FORWARD LENGTH=287
SoyBase E_val: 1.00E-83 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF04720 PFAM
Protein of unknown function (DUF506)
JGI ISS
UniRef100_Q9SUU4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AT4g32480/F8B4_180 n=1 Tax=Arabidopsis thaliana RepID=Q9SUU4_ARATH
SoyBase E_val: 5.00E-81 ISS
UniRef100_UPI0001B637EE UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0001B637EE related cluster n=1 Tax=unknown RepID=UPI0001B637EE
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g24760
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g24760
Paralog Evidence Comments
Glyma07g31690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g24760 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g179200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g24760
Coding sequences of Glyma13g24760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g24760.1 sequence type=CDS gene model=Glyma13g24760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGCTACCTCTATGGTCCGAGGAGGAGTCACGAGGTTTCTACCCCGAAGGGAATCATTGGGGTGCGAGAAACTACAACTTGGAGTTGGAGATGTGGAGTTTGAATTTCTCGATGATGGTGAGATGATGATGTCGTTGGTCAAAAGTGATGAAAGTTCTGGCGATGAGTTTCGTCAATCCAATGAAATGGAATTGGATGATGATGATGATGGTGAGAGGGTTGATGGTGGCAGCGTTGAGGAGAATAGAAGCTTTTGGGATAATCAACACCAGCTTTTGCAGAACTACCTATATAGATCAACTTCTATTGAGTCAAGGATAAGGAATGCCACCAAAGAAGCCGTTCAGGAAATACAAAACGCAGAAATAGTGTGCAGTTGCAGTAGACAGATAATTTCCAGATCCTGTAGAAACTGCTTCATTATAGAAGTCTCAAGACGCCTTCAGAATTCTGGTTATAACAGTGCCATTTGCAAAACAAAATGGAGAAGCTCACCAAGTAATATTCCATCAGGAGAGCATACTTTCCTAGATGTAATAGACAGCACAAGCAAAAAGCAAGAAGTTAGGGTGATCATAGAACTGAATTTTCGAGCAGAGTTTGAGATGGCAAGGGCAAGTGAAGAGTACAACGGGCTAGTGAGCAAGCTCCCTGAGGTGTACGTGGGGAAAATAGAGAGATTAAGCAACATCATCAAGGTGTTGTGTATGGGAGCAAAAAAGTGCATGAAGGAAAACAAAATGCACATGGGACCATGGAGGAAGCACAAGTACATGCAAGCTAAGTGGCTAGGTTCATGCAAAAGGAACACCTCAACAACTACTTCATCACTTAATTCAATGATGGGGTATTCCGAGGTGGTGATGCCAAAACCAAAGCCTAGAGCATCACTGCTAACAGTGGATCTGATGCTAGAAAATAATAATTTTAAGACAGAAATGTTGAAGCTTCCCAATATGCATTGTACAGCTGTTGAAGTTTTGTGA
Predicted protein sequences of Glyma13g24760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g24760.1 sequence type=predicted peptide gene model=Glyma13g24760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGATSMVRGGVTRFLPRRESLGCEKLQLGVGDVEFEFLDDGEMMMSLVKSDESSGDEFRQSNEMELDDDDDGERVDGGSVEENRSFWDNQHQLLQNYLYRSTSIESRIRNATKEAVQEIQNAEIVCSCSRQIISRSCRNCFIIEVSRRLQNSGYNSAICKTKWRSSPSNIPSGEHTFLDVIDSTSKKQEVRVIIELNFRAEFEMARASEEYNGLVSKLPEVYVGKIERLSNIIKVLCMGAKKCMKENKMHMGPWRKHKYMQAKWLGSCKRNTSTTTSSLNSMMGYSEVVMPKPKPRASLLTVDLMLENNNFKTEMLKLPNMHCTAVEVL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
