Glyma13g24711 - SoyBase

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Report for Sequence Feature Glyma13g24711

Feature Type:	gene_model
Chromosome:	Gm13
Start:	28032151
stop:	28032487
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g24711

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G36240	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein \| chr1:13614890-13616233 FORWARD LENGTH=112	SoyBase	E_val: 9.00E-27	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG2988	KOG	60S ribosomal protein L30	JGI		ISS
PTHR11449	Panther	RIBOSOMAL PROTEIN L30	JGI		ISS
PF01248	PFAM	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	JGI		ISS
UniRef100_I1KWQ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWQ7_SOYBN	SoyBase	E_val: 1.00E-28	ISS
UniRef100_O49884	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L30 n=1 Tax=Lupinus luteus RepID=RL30_LUPLU	SoyBase	E_val: 1.00E-27	ISS

Expression Patterns of Glyma13g24711

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g24711 not represented in the dataset	Glyma13g24711 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g24711 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g178600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g24711

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g24711

Limit To All Plant Sequences

>Glyma13g24711.1   sequence type=CDS   gene model=Glyma13g24711   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCCGCCAAGAAGACCCATGAGAGCATCAACAAGAGGCTCCTTCTTACCGTTCTCAAATCCCTTAGGAGCTCCAAAGGGAAATTAATTATCATTGCTAACAACTGCACCCCTTTGAGGAAATCAGAGATTGAATACTATGCTATGTTGGCAAAGGTTGGACATAATAGCATTATTGATCCTGGTGATTCGGATATCATTATTAAGACATTGCCTGGCGAACAGTAA

Predicted protein sequences of Glyma13g24711

Limit To All Plant Sequences

>Glyma13g24711.1   sequence type=predicted peptide   gene model=Glyma13g24711   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAAKKTHESINKRLLLTVLKSLRSSKGKLIIIANNCTPLRKSEIEYYAMLAKVGHNSIIDPGDSDIIIKTLPGEQ*

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