Glyma13g24590 - SoyBase

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Report for Sequence Feature Glyma13g24590

Feature Type:	gene_model
Chromosome:	Gm13
Start:	27945605
stop:	27948228
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g24590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33810	AT	Annotation by Michelle Graham. TAIR10: squamosa promoter binding protein-like 3 \| chr2:14305342-14305828 FORWARD LENGTH=131	SoyBase	E_val: 6.00E-36	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0009886	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009911	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010229	GO-bp	Annotation by Michelle Graham. GO Biological Process: inflorescence development	SoyBase	N/A	ISS
GO:0010321	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of vegetative phase change	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0048507	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF03110	PFAM	SBP domain	JGI		ISS
UniRef100_G7ISD5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Squamosa promoter binding-like protein n=1 Tax=Medicago truncatula RepID=G7ISD5_MEDTR	SoyBase	E_val: 3.00E-43	ISS
UniRef100_I1M086	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M086_SOYBN	SoyBase	E_val: 2.00E-74	ISS

Expression Patterns of Glyma13g24590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g24590 not represented in the dataset	Glyma13g24590 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g24590

Paralog	Evidence	Comments
Glyma07g31880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g24590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g177400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g24590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g24590

Limit To All Plant Sequences

>Glyma13g24590.2   sequence type=transcript   gene model=Glyma13g24590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGTCAACAACAAAAAAAAAATCGAGACCAAGACCAAGAAGACCCTATGTGGTGGTCCTCACTCATTAATTCTCTCATATCATTCATTCCTATTTACCCTTCTGAGTTTTAAGTATTTATATCAACTATTTATGGTCATGTTCTCCTTAAGTAACTTCCGAGTCCTTTTTTTTTATTTTTTTCTTTTATCATAACCTTCTTCTGGAGCTCTGTGGAAGTTACTATGGACACAAGCAGGTCTGAGGGAAAAAGGGTCATGAGGTACAAAGAAGAAGATGATGATAATGATGATGAAGAAGAAGAAGAGGTGGTGAGTGAGATGGGTTTTGAAGAAGATGGAAGGAGGAATAAGAGAGTAATAAGAGATCTCTATGGAAAGAGAGGGTCCAAAGGTGGAGGCTCAATAACACCTTCTTGCCAAGTGGACAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTACCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAGGCTCCTTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGGTTATATCTTTGCTGTGAATTCTGCCTGAGGGAAAAATTCCATGTGCTATCAGAATTTGATGACTCAAAGAGGAGTTGTAGAACGCGGTTGGCTGGGCATAATGAGAGGCGTCGCAAATATGCAGTTGACTAGCTACCATGGACAATGATTTCTTCTATGGGATGGACATTAATAATCATTGAGGCAAGCATGTGATTAATGAAATTAAATTTCCCATTCAAATCTTCATAAATCATTGTTGCTGGTCTCTAAGGATGCTCTCTATCTTCTGTCAAGATTTTCATATGCAAAGATTTTTCTGTTAGTTACAACTATGAAAGGATATTTCTACTTAATTAGAACTTTTATTATATTTTGGTTTGAGATAAATGGAAAGAAGAAATTTTAATGAGTTTCATGGTTTGGTTAAAAGATAATAAGTGATGAGAGGATGAACTTTAGTTCATTGTTTAGTTCAGAAATGAAGGAAGG

>Glyma13g24590.3   sequence type=transcript   gene model=Glyma13g24590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGATGACTGGGACAAATGAGAACCACTAGACCACTACACAAGGCACATGTTTTTTCACCCAAAAAAGAAAAAAGAATCAGTGTTGCTCCAATTACTTAGCTATCATTATCTTTTTCAAAACTCTTGGCTCAAAGAAAAGTCCAAGGTGGTAAATTAACAAGAGTGCATTGAAGAACAAGGTTTGGTTTGTTTTTGTTTTGTTTTGTTTTGTCTGTTGCCTTGGCTAGGTTTTCTTGAATCGTACACACCTAAGGCTTAAGGCTTATAGCTACTTTTGTTTCTGACCATTTTACTGTTACCCCTAGTTGTCAACAACAAAAAAAAAATCGAGACCAAGACCAAGAAGACCCTATGTGGTGGTCCTCACTCATTAATTCTCTCATATCATTCATTCCTATTTACCCTTCTGAGTTTTAAGTATTTATATCAACTATTTATGGTCATGTTCTCCTTAAGTAACTTCCGAGTCCTTTTTTTTTATTTTTTTCTTTTATCATAACCTTCTTCTGGAGCTCTGTGGAAGTTACTATGGACACAAGCAGGTCTGAGGGAAAAAGGGTCATGAGGTACAAAGAAGAAGATGATGATAATGATGATGAAGAAGAAGAAGAGGTGGTGAGTGAGATGGGTTTTGAAGAAGATGGAAGGAGGAATAAGAGAGTAATAAGAGATCTCTATGGAAAGAGAGGGTCCAAAGGTGGAGGCTCAATAACACCTTCTTGCCAAGTGGACAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTACCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAGGCTCCTTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGGTTATATCTTTGCTGTGAATTCTGCCTGAGGGAAAAGTTTTGATTAGAGTTTTTGTTAGTTATGCATATGTGTTGTTTTTTTCTTCTTTCAAGCAGCCCTAGCTAGTTTTTGAGGAAGGGAGAAAACCCTTCAATTTGAATATGGCTTATGATTGGAAGGGAAATCTTGTGTCTTGCGCCAAAGGCTCACTCTCTGCTTCTTTTGTTTCCAAGTATTTTGTTTCTTCTTCGGATTATTCAGCAGACTTAGGTGTATTAATTAAACTAGTCGAGACTTCTTGTATTGCTTTATTTTTAGTTTTTAGCAAGTACAAAAACGGAAAATCTTGGGTATGGAGGATTCCCCACAATCCACATTACCCTGATTATAGAATGCACATTTTATATAACATTGTAGAAAGTTAGAAAACAATGACGAAATTAATGTGCTCAGAGCCAATAATTCTACTACTATAACATTTTTCACCAAGGTAATTCTTCACTAAGCTTGGTTATCAT

Coding sequences of Glyma13g24590

Limit To All Plant Sequences

>Glyma13g24590.1   sequence type=CDS   gene model=Glyma13g24590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACAAGCAGGTCTGAGGGAAAAAGGGTCATGAGGTACAAAGAAGAAGATGATGATAATGATGATGAAGAAGAAGAAGAGGTGGTGAGTGAGATGGGTTTTGAAGAAGATGGAAGGAGGAATAAGAGAGTAATAAGAGATCTCTATGGAAAGAGAGGGTCCAAAGGTGGAGGCTCAATAACACCTTCTTGCCAAGTGGACAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTACCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAGGCTCCTTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGATTCCATGTGCTATCAGAATTTGATGACTCAAAGAGGAGTTGTAGAACGCGGTTGGCTGGGCATAATGAGAGGCGTCGCAAATATGCAGTTGACTAG

>Glyma13g24590.2   sequence type=CDS   gene model=Glyma13g24590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACAAGCAGGTCTGAGGGAAAAAGGGTCATGAGGTACAAAGAAGAAGATGATGATAATGATGATGAAGAAGAAGAAGAGGTGGTGAGTGAGATGGGTTTTGAAGAAGATGGAAGGAGGAATAAGAGAGTAATAAGAGATCTCTATGGAAAGAGAGGGTCCAAAGGTGGAGGCTCAATAACACCTTCTTGCCAAGTGGACAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTACCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAGGCTCCTTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGGTTATATCTTTGCTGTGAATTCTGCCTGAGGGAAAAATTCCATGTGCTATCAGAATTTGATGACTCAAAGAGGAGTTGTAGAACGCGGTTGGCTGGGCATAATGAGAGGCGTCGCAAATATGCAGTTGACTAG

>Glyma13g24590.3   sequence type=CDS   gene model=Glyma13g24590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACAAGCAGGTCTGAGGGAAAAAGGGTCATGAGGTACAAAGAAGAAGATGATGATAATGATGATGAAGAAGAAGAAGAGGTGGTGAGTGAGATGGGTTTTGAAGAAGATGGAAGGAGGAATAAGAGAGTAATAAGAGATCTCTATGGAAAGAGAGGGTCCAAAGGTGGAGGCTCAATAACACCTTCTTGCCAAGTGGACAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTACCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAGGCTCCTTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGGTTATATCTTTGCTGTGAATTCTGCCTGAGGGAAAAGTTTTGA

Predicted protein sequences of Glyma13g24590

Limit To All Plant Sequences

>Glyma13g24590.1   sequence type=predicted peptide   gene model=Glyma13g24590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTSRSEGKRVMRYKEEDDDNDDEEEEEVVSEMGFEEDGRRNKRVIRDLYGKRGSKGGGSITPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAPSVHMAGLQQRFCQQCSRFHVLSEFDDSKRSCRTRLAGHNERRRKYAVD*

>Glyma13g24590.2   sequence type=predicted peptide   gene model=Glyma13g24590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTSRSEGKRVMRYKEEDDDNDDEEEEEVVSEMGFEEDGRRNKRVIRDLYGKRGSKGGGSITPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAPSVHMAGLQQRFCQQCSRLYLCCEFCLREKFHVLSEFDDSKRSCRTRLAGHNERRRKYAVD*

>Glyma13g24590.3   sequence type=predicted peptide   gene model=Glyma13g24590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTSRSEGKRVMRYKEEDDDNDDEEEEEVVSEMGFEEDGRRNKRVIRDLYGKRGSKGGGSITPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAPSVHMAGLQQRFCQQCSRLYLCCEFCLREKF*

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