Glyma13g24530 - SoyBase

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Report for Sequence Feature Glyma13g24530

Feature Type:	gene_model
Chromosome:	Gm13
Start:	27892745
stop:	27893224
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g24530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47250	AT	Annotation by Michelle Graham. TAIR10: 20S proteasome alpha subunit F2 \| chr1:17319220-17320900 FORWARD LENGTH=277	SoyBase	E_val: 2.00E-45	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0051603	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis involved in cellular protein catabolic process	SoyBase	N/A	ISS
GO:0000502	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005839	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome core complex	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0019773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome core complex, alpha-subunit complex	SoyBase	N/A	ISS
GO:0004175	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity	SoyBase	N/A	ISS
GO:0004298	GO-mf	Annotation by Michelle Graham. GO Molecular Function: threonine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0008233	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase activity	SoyBase	N/A	ISS
PTHR11599	Panther	PROTEASOME SUBUNIT ALPHA/BETA	JGI		ISS
PTHR11599:SF12	Panther	PROTEASOME BETA/DELTA SUBUNIT	JGI		ISS
PF00227	PFAM	Proteasome subunit	JGI		ISS
UniRef100_G7J4Q2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Proteasome subunit alpha type n=1 Tax=Medicago truncatula RepID=G7J4Q2_MEDTR	SoyBase	E_val: 2.00E-49	ISS
UniRef100_I1M080	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M080_SOYBN	SoyBase	E_val: 4.00E-81	ISS

Expression Patterns of Glyma13g24530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g24530 not represented in the dataset	Glyma13g24530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g24530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g176700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g24530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g24530

Limit To All Plant Sequences

>Glyma13g24530.1   sequence type=CDS   gene model=Glyma13g24530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGGTTTGCACCCAGCAGTCTTGGAAACACCCTTATGGAGTTGGACACCTGGTAGCTGGATTAGATGAATCAGGAGCTCACCTCTATTACAACTGTCCCAGTGGAAACTATTTTGAATATCAGGCTTTTGCTATTGGGTCTCGCTCTCAAGCTGCAAAGACATATTTGGAACGCAAGTTTGAGAATTTCGTGGGTTCTTCATTAGAAGATCTGATCAAAGATGCACTTATTGCAACTAGGGAGGAGGAAGAAGCCGCACCAGCTGAAGAAGAAGCTCAGCCAGCAGCCGAACAGGATGCTCCCACAGATCAGGGTGCTGCTGCTGTAGACCAAGGTGGTTCTCCTATGGACATC

Predicted protein sequences of Glyma13g24530

Limit To All Plant Sequences

>Glyma13g24530.1   sequence type=predicted peptide   gene model=Glyma13g24530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
QVCTQQSWKHPYGVGHLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFENFVGSSLEDLIKDALIATREEEEAAPAEEEAQPAAEQDAPTDQGAAAVDQGGSPMDI

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